Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01718 ATGGCCATGGCACTTCGCAGACTTTCCTCCACCATCAACAAACCGTTCTCCCACGCCACTTCCATTTATCGCACGTCGTCTTCGCTCTCCGCTCACGAAAAAGACAAATCTCGCGCAGATTGGACGAAGCAGCTCAACGATCCTCTCGAGGTTGTGGATCCCGAGATCGCTGACATAATCGAACTCGAGAAAGCGCGCCAATGGAAGGGATTCGAACTTATTCCTTCCGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACAAATAAATACAGCGAAGGATATCCAGGAGCTAGATACTATGGAGGAAATGAGTATGCTGATCTGGTTATGAACGTTTTTGTTTCGGATTCTGAAATTTATCGTATGTTCGGTGTGCTGATTTTGGAGTACATTGACATGGCTGAGACATTATGTCAGAAGCGTGCGCTTGAAGCTTTTCGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCCGGATCCCCTTCTAACTTTCAAGTTTACACTGCCTTATTGAAACCTCATGAGAGAATTATGGCCCTGGATCTTCCCCATGGTGGACATCTATCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCAATATTCTTTGAAACCATGCCTTACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGGAGGTTGTTCCTGTGGAAGGGAGAGTGTTCCCTTGGGGAAAGATTTTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCCCGCCTTTATGATTATGCACGTGTTCGCAAGGTATGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCCTTTGATTATGCAGATATTGTAACAACCACAACACACAAGTCACTTCGTGGACCACGTGGGGCTATGATATTTTTCAGGAAGGGTGTGAAAGAAATAAACAAGCAAGGGAAGGAAGTATTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTACAGGCTTAGCTGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTATCAAGAGCAAGTACTTAGCAACTGCGCAACATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGATAACCATTTAGTGTTAGTGAACTTGAGAAACAAGGTAGATGTTGTGATCAATTGCTCTGAAAAACTATTGGGCATTGATGGTTCCAGGGTTGAGAAGGTACTAGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTATCTGCTATGGTTCCTGGTGGCATTCGGATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTTAAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTACAGATTAAGGAAAATACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCCATGCAATCAGATGAACAAATTCAATCTAAGATTGCTAATCTCCGTCTTGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGAGAAAGAGACAATGAAGTATGGTAAGTGA 1692 0.4309 MAMALRRLSSTINKPFSHATSIYRTSSSLSAHEKDKSRADWTKQLNDPLEVVDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYADLVMNVFVSDSEIYRMFGVLILEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQEVVPVEGRVFPWGKILEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQEQVLSNCATFAQSLLEKGYDLVSGGTDNHLVLVNLRNKVDVVINCSEKLLGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEQIQSKIANLRLEVEDYAKQFPTIGFEKETMKYGK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01718 563 Hamap Serine hydroxymethyltransferase [glyA]. 48 553 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu1g01718 563 FunFam Uncharacterized protein 266 386 - -
Vimu1g01718 563 Gene3D - 135 391 IPR015421 GO:0003824
Vimu1g01718 563 Gene3D - 78 116 IPR015421 GO:0003824
Vimu1g01718 563 Coils Coil 528 548 - -
Vimu1g01718 563 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 312 328 IPR019798 GO:0030170
Vimu1g01718 563 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 34 556 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu1g01718 563 SUPERFAMILY PLP-dependent transferases 44 553 IPR015424 -
Vimu1g01718 563 Pfam Serine hydroxymethyltransferase 135 498 IPR039429 -
Vimu1g01718 563 Pfam Serine hydroxymethyltransferase 49 118 IPR039429 -
Vimu1g01718 563 CDD SHMT 52 525 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vimu1g01718 563 Gene3D Aspartate Aminotransferase, domain 1 53 77 IPR015422 GO:0003824
Vimu1g01718 563 Gene3D Aspartate Aminotransferase, domain 1 392 550 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01718 Vimu-Chr1 17765930 17774550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01718 K00600 - gmx:100816213 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01718 1 17765930 17774550 Vimu1g01718 1 17765930 17774550 ECH