Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01710 ATGGAAGCTGTTCCGGATCAAGACACTAGTATATGCACTCACTGTGAACGGGCTGTTCCTGTTGCAAATATTGACTTGCATTATGCTCATTGCTCTCGGAAACTTGAAAAATGCAAAATCTGTGGTGATATGGTTCCTAGAAAAAACGTGGAGGATCATTATTTAAACACACATGCACCGTTCAAGGCAAATCAAATTGTGAAGACATATGATGAACATAGTGAGACAATGGAGCGTGATATTTTAGATATCCATAAAGGTGAAGAATGCCCTCAAAGGATTGTCACTTGTGAGTTCTGTGAGTTTCCATTGCCAGCAATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACATATGTAACAAATATGTTAGACTTCGTGAAAGATTCAGCCATGAGGCTCGGTGCAATGGCATTATCCAAGATACTTCTGTGGGCTCTTCAAGAGTTAATTCTTGTGTAGCTGTTTCATTTCAAGCTTCAACTTACACTATAGGTTTGGTTGCTTCATGTAGCAGGCATAAATCCAGTTTCGAGTCTTCATTCAACATGTTAAGCTATTCAATGTCATGCATCCTATCATACTTCCTTTCATGTCATGCCATCACTCCCATTTTGTTCACTGGCCTCTTCTCGTCCTGTTCTAGGGTGCGAAACCCTAACCTCCGCTCTCTCATTCTTCTATCTCACTTGACTATCATCTCTGCCAAGATTTTCTTCGGGGAGCGCTTCGAAAACAAATGGGAAAATGGGTGGGTTAAATCAGATTGGAAAGAAAATGTGGGGGAGTGGAACCACACTTCTGGTCAAGGGAATGGGGACGCCAATGAAGATTACAAATTCTACGCCATTTCTGCTAAGGACCCTAGATTCAGCAATAAGGATAAGACACTAGTTTTCCAATTTTTGGTCATGTATGAACAGAAGCTTAACTATGGTGGGGGCTACATGAAGTTGCTTAGTGGGAATGTTAATCAGAAGAAATGTGGGGGCGATACTCCTTACTGTATCATGAATGTGAGGGAAACTGAGGGAGATCCAGGTGCTGCTAGAAGAAGGCCGCAGAATGACTTCTCAACTAAACGCCTTCTTTTCACAATAGCCATCACTGGTATTGCTGTGATACTGGGATCTTTTTTTCTACAGAGGAAGGCAGAACCCAGTGATGTGCATTAG 1194 0.4204 MEAVPDQDTSICTHCERAVPVANIDLHYAHCSRKLEKCKICGDMVPRKNVEDHYLNTHAPFKANQIVKTYDEHSETMERDILDIHKGEECPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHICNKYVRLRERFSHEARCNGIIQDTSVGSSRVNSCVAVSFQASTYTIGLVASCSRHKSSFESSFNMLSYSMSCILSYFLSCHAITPILFTGLFSSCSRVRNPNLRSLILLSHLTIISAKIFFGERFENKWENGWVKSDWKENVGEWNHTSGQGNGDANEDYKFYAISAKDPRFSNKDKTLVFQFLVMYEQKLNYGGGYMKLLSGNVNQKKCGGDTPYCIMNVRETEGDPGAARRRPQNDFSTKRLLFTIAITGIAVILGSFFLQRKAEPSDVH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01710 397 SUPERFAMILY Concanavalin A-like lectins/glucanases 240 344 IPR013320 -
Vimu1g01710 397 Gene3D - 235 351 - -
Vimu1g01710 397 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 6 391 - -
Vimu1g01710 397 Pfam Calreticulin family 248 344 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu1g01710 397 SUPERFAMILY TRAF domain-like 12 72 - -
Vimu1g01710 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 146 IPR013083 -
Vimu1g01710 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 60 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01710 Vimu-Chr1 17554024 17563353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01710 - - vra:106765333 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01710 1 17554024 17563353 Vimu1g01710 1 17554024 17563353 ECH