Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01703 ATGGCGACGTTCGAACTGTACCGCAGGTCGACGATCGGAATGTGCCTGACGGAGACGTTGGACGAGATGGTTCAGAACGGTACTCTCAGCCCTGAGCTCGCGATTCAGGTTCTGGTCCAGTTCGATAAGTCCATGATTGAGGCTCTGGAAACGCAAGTTAAGAGCAAGGTCTCCATCAAGGTAACATTGCAGCATTTCTTTTCCTCTTCTAATTATATTCACACACTCACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATAGAGAGAGATTATATAGTTTGAGTTGCTAA 348 0.3937 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMIEALETQVKSKVSIKVTLQHFFSSSNYIHTLTHTHTHTHTHIYIYIYIYIYIYIYIYIYIHRERLYSLSC 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01703 115 FunFam Transcription initiation factor IIA subunit 2 2 54 - -
Vimu1g01703 115 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Vimu1g01703 115 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 78 IPR003194 GO:0005672|GO:0006367
Vimu1g01703 115 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Vimu1g01703 115 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Vimu1g01703 115 CDD TFIIA_gamma_N 4 51 IPR015872 GO:0005672|GO:0006367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01703 K03123 - cpap:110818874 114.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01703 1 17478051 17478503 Vimu1g01703 1 17478051 17478503 ECH