Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01699 ATGAGTTGGGAAGAACCATTTTACACTCTCTTAACCAACTCATTCACCCTTCTTTCATGGCCTCCATTTAGTTTGCTTTGTCCATTGTTTGTTTCTGTTTGTGCAATGGAGAGTGATTCTCGTTCCAGCAACCAGCGATGCCTTGCTTTTTGGGTTCTGTTTTCCTTGTCAACAATCGTGGAATGGGAACTTTCAGTGTTGTTTAACTGCCTCCCATGGTGGCCGCATCTGAAATCCATAGCCACTGTCTTGCTGTTGATGCCTTATGTTGGTGCAGCACCATGTGTCTACAAATTCCTAATTAGACCATACTGTTCTTGGACCCTATTTACAAAGATATCAAACATCTTCAGTGAGAAGGGCACAGATTTTGAATCAGATGAGGGAGCTAAACTTTTTGATGTCTCTGACCAGACAATTACATCAAGTCAAATACAGGAAAAGGAACTTGTTGATTTCTCTGATCAGACAATTACGCCAAGTCAAATACAAGAAAAGAAACTTGAAGCATGTCAGCGTTTGCCACCGTCGCCAGAGTTCCAGTTTCGACTGAAGATTGCACAGTTTCGATTGTCTTGGCCAATCGACCATTGTGTTGTAAATGATGCCTTCATTTGGGCTACTTTGTGGATTTGCTCCCTTTTCTACGTGCATGATGGCACGTCCCATCTCTTTTCAGGCAGTGATCTAGAATGTCGAGGTCTGACGTCGTGTGTGGTCGCTTGTCTCGTCTCTTCTCAAGAAGCGCCTATTTTTCCTCTTTCAAGTGCCTTGATTAAAGAATCTTGGATTTTTAGGGATCATAGTGCAGGTTGTGACAAAACTGAAAGCAGTTATGCAAGGATAACTACTAAAAAGCTAGTTCAGAAGGAATGGAGTTGTGCTTTATGTCAGATTAGTACTACCAGTGAAAATTGCTTGAGGGCACATCTCAAAGGGAAGAAACACAAGGATAATGAAAAAAACCTAAGAGTAGAGTTCCATGAAACAAATAGCAAATCCCTGTTGTCTTGTACTCAGAAAAGAATCAAAGGTATGGTTCTGATAAGGAATCTCAACCAAATTGCTAGTATTCTCAACCCAGTTTCCAGATCCATAAGATGGTGTGAGTGGACAAAGCCAAAGTTTGGATGGACAAAACTAAACACTGATGGTTCTATCTACAGAGACAGTGCCAGTTTTGGAGGGCTGCTTCGTGATCATACGGGTGAACCAATATGTGCTTTTGTCTCTAAAGTGCCTCAAGGAGATGTTTTCTTGGTTGAACTGTGGGCCATTTGGAGAGGCCTTGTTCTTTGCTGGGGCCTTGGGATCAAAGCAATATGGGTGGAATCAGACTCCATGAGTGTTGTGAAGACAGTCAATAGAAAACAGCATTGTCCAAAAGCTGATAGCTATTTGAAACAAATTTGGAAACTATTGAAGAAGTTTGATAAATATCAAATTTCTCACTCATGGCGTGAAACTAACAGAGCAGCAGATCATCTTGCTAAGATGGCTGTTTGGGGAAATGATGTGGTTTTGTGGCCAGTTGATTTTCCACCTACCCTTTGCAGTATCATTGAAGATGATGCCAGAGGAAAGAAATACCTCAGGCGATGA 1602 0.4164 MSWEEPFYTLLTNSFTLLSWPPFSLLCPLFVSVCAMESDSRSSNQRCLAFWVLFSLSTIVEWELSVLFNCLPWWPHLKSIATVLLLMPYVGAAPCVYKFLIRPYCSWTLFTKISNIFSEKGTDFESDEGAKLFDVSDQTITSSQIQEKELVDFSDQTITPSQIQEKKLEACQRLPPSPEFQFRLKIAQFRLSWPIDHCVVNDAFIWATLWICSLFYVHDGTSHLFSGSDLECRGLTSCVVACLVSSQEAPIFPLSSALIKESWIFRDHSAGCDKTESSYARITTKKLVQKEWSCALCQISTTSENCLRAHLKGKKHKDNEKNLRVEFHETNSKSLLSCTQKRIKGMVLIRNLNQIASILNPVSRSIRWCEWTKPKFGWTKLNTDGSIYRDSASFGGLLRDHTGEPICAFVSKVPQGDVFLVELWAIWRGLVLCWGLGIKAIWVESDSMSVVKTVNRKQHCPKADSYLKQIWKLLKKFDKYQISHSWRETNRAADHLAKMAVWGNDVVLWPVDFPPTLCSIIEDDARGKKYLRR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01699 533 PANTHER OS05G0353850 PROTEIN 358 524 - -
Vimu1g01699 533 Pfam Zinc-finger of C2H2 type 292 316 - -
Vimu1g01699 533 CDD RNase_H_like 381 498 IPR044730 -
Vimu1g01699 533 SMART ZnF_U1_5 289 323 IPR003604 GO:0003676|GO:0008270
Vimu1g01699 533 Pfam TB2/DP1, HVA22 family 28 104 IPR004345 -
Vimu1g01699 533 Gene3D - 378 501 IPR036397 GO:0003676
Vimu1g01699 533 Gene3D Classic Zinc Finger 280 330 - -
Vimu1g01699 533 Pfam Reverse transcriptase-like 382 500 IPR002156 GO:0003676|GO:0004523
Vimu1g01699 533 SUPERFAMILY Ribonuclease H-like 378 509 IPR012337 -
Vimu1g01699 533 SUPERFAMILY beta-beta-alpha zinc fingers 285 326 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01699 Vimu-Chr1 17404461 17409081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01699 370 498 Glycoside Hydrolase AT2G33160 26.119 5.33e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01699 - - gmx:102661917 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01699 1 17404461 17409081 Vimu1g01699 1 17404461 17409081 ECH