Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01491 ATGAACAACTTGGAGTCCTACCCTCCCATTCTCCGCCACCTTAGCCACCATCACCATCACCCTCCAGACGGCGGCGACCCGATCCAGGAGTCGGACCCAGATTCACTACCAGTCATAGATCTTCAACGCTTAAGCCATGACATGAATATGCAGAAGGTCCTTGAAGAGGCTTGCAAGCATTGGGGGTTGTTCCGTTTGGTTAACCATGGAGTTCCATCAACCCTATTGACCCAACTTCAAGACCAAGCCAAACAACTTTTCTCTCTTTCCTTTGAGTCCAAACAAGCCTCATGTAATGGTGCCAACCCTGTGACTTACTTTTGGGGCACCCCTGCCCTTACTTCCTCTGGGGCACCCCTAACAACTGCCCCTCAAAACATCAATTGGGTCGAAGGTTTCAACATGCCTCTGCCTCACCTCTCCCAATTTCAACCTCAACTTCCTCAGCTTCACTCTCTCAGAGATTCGGTGGTGGAATATGGAGAACATTTGAGCAGAATTGGTAGAAGATTATTCGAAGCTATGGTGAAGAACCTTGAGCTGAAGATTGAAGCATCAAGTTCTTACGTAGCAGAAAGCACAGGAATTATGCGTATTTATCGTTATCCAAAGTGCTCAAACAATAATAACATTGGTTTGGGCATGGAGGTGCACACAGATAGCTCTGTATTGTCTATATTGAGCCAAGAAAATGAAGTGAGTGGACTGGAGCTCCTCAAAGATCATCAATGGCTCACTGTTAAACCCGTTTCCAACACACTCATTGTCAACCTTGGAGACATGATGCAGGCAATAAGTGATGACAAATACAAAAGTGTGACACACAGAGTGAAGCTAAACAATGAGAGAGAAAGGATCTCACTATGCTATTTTGTGTTCCCTAATGAAGATCTTCAGATTCAGAGTTCCAACTACAGACCCTTCACTTACAAACAATTTAGGTCAAAAGTGCAACAAGACATCAAAACTGTCGGTCACAAAGTTGGGCTTCCAAGGTTTCAACACAACCCTCATTCTCTGAATTAA 1026 0.4474 MNNLESYPPILRHLSHHHHHPPDGGDPIQESDPDSLPVIDLQRLSHDMNMQKVLEEACKHWGLFRLVNHGVPSTLLTQLQDQAKQLFSLSFESKQASCNGANPVTYFWGTPALTSSGAPLTTAPQNINWVEGFNMPLPHLSQFQPQLPQLHSLRDSVVEYGEHLSRIGRRLFEAMVKNLELKIEASSSYVAESTGIMRIYRYPKCSNNNNIGLGMEVHTDSSVLSILSQENEVSGLELLKDHQWLTVKPVSNTLIVNLGDMMQAISDDKYKSVTHRVKLNNERERISLCYFVFPNEDLQIQSSNYRPFTYKQFRSKVQQDIKTVGHKVGLPRFQHNPHSLN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01491 341 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 192 294 IPR005123 -
Vimu1g01491 341 Gene3D - 3 315 IPR027443 -
Vimu1g01491 341 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 36 316 - -
Vimu1g01491 341 PRINTS Isopenicillin N synthase signature 54 71 - -
Vimu1g01491 341 PRINTS Isopenicillin N synthase signature 254 280 - -
Vimu1g01491 341 SUPERFAMILY Clavaminate synthase-like 3 317 - -
Vimu1g01491 341 MobiDBLite consensus disorder prediction 13 35 - -
Vimu1g01491 341 Pfam non-haem dioxygenase in morphine synthesis N-terminal 36 136 IPR026992 -
Vimu1g01491 341 Pfam 2OG-Fe(II) oxygenase superfamily 199 294 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01491 Vimu-Chr1 13142208 13145327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01491 36 291 Glycosyltransferase AT5G59530 29.231 5.50e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01491 K04125 - gmx:100819244 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01491 1 13142208 13145327 Vimu1g01491 1 13142208 13145327 ECH