Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01386 ATGAGAACATCCAAATTTCCATGTAGGGGATTAGATTACCGTCTATATCTTCTGATTTTTGTTGTGTGTCTGGTGTTGTATGGAACAGTTTCAAGATTGAATACTGCAAATGTTTCTGATGCCACATTGTCTGAGTTAAGGCACTTCAATCCTAAGCATGTTGTATCAAAAGGAAAAGGGTACCCTCCTGTGCTTGCATATTGGATTCTTGGCACCAAAGGAGATACTAAGAAGATGCTGAGGCTGTTGAAGGCTGTGTACCATCCAAGAAACCAGTACCTGCTTCAGCTTGATGATCGTTCCTCTGAGTCTGAGAGAATGGATTTAGCCATTTCAGTCAAGTCAGTTAAGGTGTTTGAGGAATTTGGAAATGTGAATGTCATTGGGAAAAGTTATGCCATAAATAGGATGGGATCTTCTGCTCTCTCAGCTCCTCTGCATGCTGCTGCATTGCTTCTTAAACTGAACTCAGAATGGGACTGGTTCATCACATTAAGTGCTGCAGATTATCCTCTCATGACTCAGGATGATATCCTTCATGCTTTCACATTCTTGCCAAGATATGTCAACTTCATTCATTACACTAACAAGACAATTCGGAACGAGCAACGAGACATTAATCAAATTGTGGTAGACCAAAGTTTGCATTGTGAAAAGAATAGTCCACTTTTTTTTGCTGTGGAATCCAGAGATACCCCAGATGCTTTTAAGCTATTTCGAGGCTCACCCTGGATGGTTCTTACAAGAGCCTTCATGGAGTACTGTGTCACAGGGTGGGACAATCTACCAAGAAAACTTCTAATGTTCTTCACCAATGTGGCTTACCCTGTGGAATCATATTTCCACACAGTGTTGTGTAACTCCAAAGAGTTCCAAAACACCACTGTGGACAATAATCTAATATACAGTCTTTGGGACACTGATCCATCTGAATCCCAATTTCTTGATATGTCACATTATGATACAATGCTGGAAACTGGTGCTGCATTTGCTCGTCCATTTGGCGAAGGTGATGTGGTTCTGGAGAAAATTGATGATTTGATCCTTAACAGATCATCCAATGGGTTGGTCCAAGGAGAGTGGTGTTCAAACTCAGAAACAAATAAGACCACAGAGGTTTCAGAATCTGAGGAAGAAGAACAAGAAGAAGAGTTCTTGTGCTCAGAATCTGATAATGTTGATGTTGTAAAGCCAGGGCCATTTGGCATCAAGCTTAAGATTCTGCTAGCTGAAATTGTGAACAAAAGAAAATTCATACCAAACCAGTGCAAAGCCTTTGAAAGGTGGTGA 1290 0.4078 MRTSKFPCRGLDYRLYLLIFVVCLVLYGTVSRLNTANVSDATLSELRHFNPKHVVSKGKGYPPVLAYWILGTKGDTKKMLRLLKAVYHPRNQYLLQLDDRSSESERMDLAISVKSVKVFEEFGNVNVIGKSYAINRMGSSALSAPLHAAALLLKLNSEWDWFITLSAADYPLMTQDDILHAFTFLPRYVNFIHYTNKTIRNEQRDINQIVVDQSLHCEKNSPLFFAVESRDTPDAFKLFRGSPWMVLTRAFMEYCVTGWDNLPRKLLMFFTNVAYPVESYFHTVLCNSKEFQNTTVDNNLIYSLWDTDPSESQFLDMSHYDTMLETGAAFARPFGEGDVVLEKIDDLILNRSSNGLVQGEWCSNSETNKTTEVSESEEEEQEEEFLCSESDNVDVVKPGPFGIKLKILLAEIVNKRKFIPNQCKAFERW 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01386 429 Pfam Core-2/I-Branching enzyme 65 309 IPR003406 GO:0016020|GO:0016757
Vimu1g01386 429 PANTHER GLYCOSYLTRANSFERASE 24 423 IPR044610 GO:0015020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01386 Vimu-Chr1 11580419 11583679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01386 55 424 Glycosyltransferase AT1G71070 45.553 4.27e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01386 - - gmx:100787649 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01386 1 11580419 11583679 Vimu1g01386 1 11580419 11583679 ECH