Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01201 ATGGATAAGCTAACACCAAACCCTGCAAACTCAGTACCCCTCACTCCACTCACCTTCTTGGAAAGAGCGGCAATCGTGTACGGTGACTCTCACTCTATCCTCTACGACCACATTTCCTTCACCTGGTCACAAACCCACCGTAGATGCCTCCAACTCGCTTCTTCCCTCACTTCTCTGGGCTTAGGACGTGGCCAAGTCATCTCTGTTCTCTCCCCAAACACTCCCTCAATGTATGAACTTCAGTTTGCAGTTCCCATGTCTGGCGCCATTCTCAACAATCTCAACCTCCGTCTCGACCCCCACGCGCTCTCCGTCCTCCTGCGCCATAGCGAATCAAAACTTGTCTTCGTCCACTCTCATTCACTCCCTCTTATTCTCACCACTCTTTCAAAGTTCCCCTACACCACACCGCGTCCTTCCCTCGTCCTTATCACAGACGATGGCTCTGGGGATGCGGATGCTGTCGCGGCGGCGCACGCAATAGACACCTACGAGCGCCTTTTGAGCAGAGGCGACCCGAACTTCCGATGGGCACGGCCCAAGTCCGAGTGGGACCCAATAACCCTAAACTACACCTCCGGCACAACAGCGTCTCCCAAGGGCGTGTTACACTCCCACCGCGCAACGTTCATGATAGCCCTTGACTCTCTCATCGACTGGTGTGTGCCAAAACAACCGGTTTACTTATGGACCCTGCCTATGTTCCACGCTAACGGGTGGGGCTTCGCGTGGGGGATTGCAGCCGTTGGCGGCACCAACGTCTGCATACGTAAAACCAACGCTCCGATTATCTACCGTTCAATCGAGTCTCACAACGTGACGCACATGTGCGCGGCCCCGGTGGTTCTCAACATGCTGCTCACGAGAGCAGAACCACTGAAAAACCCGGTTCATGTCCTCATCGGAGGTTCGACGCCCCCGGCGTCGGTTCTTGCTCGGGCGGAGGAAGTAGGGTTTGTGGTGAGCCACGGGTACGGGATGACGGAGACGCTGGGGGTGGTGGTCTCGTGCGCGTGGAAGAGGGAGTGGGATAGGCTTCCAGTGAGGGAGAGGGCACGGCTGCTGGCTCGGCAGGGGGTGAGGACGGCGGCGATGTCGGAAGTGGACGTTGTAGATCCGGCGAGCGGCGTAAGCGTGAAGCGCGACGGGGTTACTTCAGGGGAAGTAGTGGTGCGAGGCTCTTGCGTGATGATGGGTTATCTGAAGGATTTGGAAGGAACGAGAAGGTGCGTAAGAGAAAATGGGTGGTTGTACACGGGGGACGTAGGGGTTGTGCATGGGGATGGGTATTTGGAGATAAAAGATAGGTCGAAAGACGTGATAATAAGTGGGGGAGAGAACGTGAGCAGCGTGGAGGTGGAGGCCGTGATGTATGCGCATCCGGCGGTGAGGGAGGCGGCGGTGGTGGGGCGGCCGGACGAGTTCTGGGGGGAGACCCCGTGCGCGTTTGTGGAGCTGAAGGAGCGGTTGGAGAGGCGGCCAACGGAAGAGGAGGTGGTGGAGTTTTGCAGAGAAAGGTTGGCTCACTTCATGGTGCCGAAGACGGTGGTGTTCAAGGATGCGCTGCCGAAGACGCCGACGGGGAAGATTCTGAAGCACGTGCTGAGGAAGGAGGCTCAGGGTATGGGGTCCTTGGCTACACGCAGTCGCATGTAG 1656 0.5761 MDKLTPNPANSVPLTPLTFLERAAIVYGDSHSILYDHISFTWSQTHRRCLQLASSLTSLGLGRGQVISVLSPNTPSMYELQFAVPMSGAILNNLNLRLDPHALSVLLRHSESKLVFVHSHSLPLILTTLSKFPYTTPRPSLVLITDDGSGDADAVAAAHAIDTYERLLSRGDPNFRWARPKSEWDPITLNYTSGTTASPKGVLHSHRATFMIALDSLIDWCVPKQPVYLWTLPMFHANGWGFAWGIAAVGGTNVCIRKTNAPIIYRSIESHNVTHMCAAPVVLNMLLTRAEPLKNPVHVLIGGSTPPASVLARAEEVGFVVSHGYGMTETLGVVVSCAWKREWDRLPVRERARLLARQGVRTAAMSEVDVVDPASGVSVKRDGVTSGEVVVRGSCVMMGYLKDLEGTRRCVRENGWLYTGDVGVVHGDGYLEIKDRSKDVIISGGENVSSVEVEAVMYAHPAVREAAVVGRPDEFWGETPCAFVELKERLERRPTEEEVVEFCRERLAHFMVPKTVVFKDALPKTPTGKILKHVLRKEAQGMGSLATRSRM 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01201 551 Gene3D - 439 542 IPR045851 -
Vimu1g01201 551 Pfam AMP-binding enzyme 22 443 IPR000873 -
Vimu1g01201 551 CDD ttLC_FACS_AEE21_like 12 537 - -
Vimu1g01201 551 PANTHER ACYL-ACTIVATING ENZYME 1 545 - -
Vimu1g01201 551 SUPERFAMILY Acetyl-CoA synthetase-like 9 542 - -
Vimu1g01201 551 Gene3D - 3 438 IPR042099 -
Vimu1g01201 551 FunFam 2,3-dihydroxybenzoate-AMP ligase 438 543 - -
Vimu1g01201 551 Pfam AMP-binding enzyme C-terminal domain 452 529 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01201 Vimu-Chr1 9385893 9387548 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01201 1 542 EF-hand Containing Proteins AT1G21540 60.727 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01201 - - gmx:100789991 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01201 1 9385893 9387548 Vimu1g01201 1 9385893 9387548 ECH