Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01199 ATGAGCCAGGAGCAACTCGAAAGACCTCAAGCAGAGAAGGCTTCTTCCGTTGACTACCAAATGGAACAACTTAAGCCAAGCGCTGCTAACTCTTCTCCTCTCACACCGCTAGGCTTCTTGGACAGAGCCGCCACCGTTTACGGCGACGCCCCTTCCATTGTCTACAACCACACAACCTTCACCTGGGCCCAAACCCACCGCCGATGCCTCCAGCTCGCCTCCGCCATCTACTCCCTCGGAATCCGCCGTGGCAGCGTCGTCTCTGTCGTCGCTCCCAACATCCCCGCCATGTACGAGCTCCAGTTTTCCATCCCCTTCGCCGGTGCTGTCCTCAACAACATCAACCTCCGCCTCGACGCCCGCACCATCTCCGTCATCCTCCGCCATGCGAACTCCGCGCTCGTCTTCGTCGACTGCGCCTCACGCGACCTCATCCTCGAAGCCTTGTCCCTCTTCCCTAAACACCACACTCAACGCCCACTACTGGTTCTCATCGCCGACGACAGTGTCGAAAACGCAGACATCTCATGCTCCGGAGATTTCGTTGACACATACGAGGGCCTGGTGAGCAAGGGCGATCCGAACTTCGAATGGGTACGGCCCATATCGGAGTGGGACCCGATGATTCTTAACTACACCTCAGGAACGACGTCGTCTCCGAAAGGGGTTGTTCACTCCCACAGAGGAATATTCATAGTCTCCGTCGACACGCTTATCGACTGGGCTGTTCCCAAGAGACCGATTTATCTCTGGACGCTCCCGATATTCCACGCTAACGGGTGGAGCCTCCCGTGGGGTATCGCTGCCTCGGGCGGCACCAACATCTGCGTCCGCAAGTTCGATGCGGGGATAATTTACTCTCTCATAAAACGCAACCACGTGACACACATGTGCGGCGCGCCGGTGGTGCTCAGCATGTTGACAAACTCCCCAGACAACAAACCGTTGGAGAGGCCAGTTCATATACTCACGGCGGGAGCACCGCCGCCAGCGGCCGTGCTCCATCGGACGGAGGCGCTCGGGTTTGTGGTTAGCCACGGGTACGGGTTGACGGAAACCGCGGGATTGGTGGTGTCATGCGCGTGGAAGGAGAAGTGGAACCGGCTTCCGGCGGCGGATCGAGCGCGGCTGAAGTCACGGCAGGGGGTGAGGACGGTGGGGATGGCAGAGGTTGACGTGGTGGGTCCCACCGGAGAGAGTGTGAAGCGCGATGGGGTAAGCGTCGGGGAGATTGTGATGAGAGGAGGGTGCGTGATGTTGGGATACCTTAAAGACCCCGAAGGAACCGCGAGTTGTTTTAAAAACGGGTGGTTCTACACAGGGGACGTCGGGGTGATGCACGAGGATGGGTACTTGGAGATTAAGGACAGGTCAAAAGATGTGATCATCAGCGGCGGCGAGAACCTGAGCAGCGTGGAGGTGGAGTCGATTTTGTACGGGCACCCGGCGGTGGTGGAGGCGGCGGTGGTGGCGCGACCGCATGAGTATTGGGGAGAGACGCCGTGCGCGTTCGTGAGCTTGAAGGCGGGGTTGAAAGAGAAACCAAGTGAAGAAGACATAATAAAGTACTGCAGGGAGAAGATGCCGCATTATATGGTTCCGAAGACGGTGGTTTTCAAGGATGAACTTCCGAAGACATCGACGGGGAAGATCCAGAAGTTTCTCCTGAGACAGATCGCGAAGGAGATGGAGTGTCGTTGGTCATTGGGGTTGCAGTGGAGGCCTTCGTTATCGGTGTGGGTGTGGCGTTCATTGGCTGTCGTCATTGTTGGTGTGTTAGGCTTGCGAAATGACGACTTCTTCGACGAGGGTAAGGGCATTTTGACGGTTCGTCACTCAGTTTCGACAAAGTTCATCTCTAGTTTGAACAAACGTTTGAGTAAGGAGCAGTGTTCATTGATTGTCGGGACTCCATTTGGTGGTTTTTAG 1929 0.5661 MSQEQLERPQAEKASSVDYQMEQLKPSAANSSPLTPLGFLDRAATVYGDAPSIVYNHTTFTWAQTHRRCLQLASAIYSLGIRRGSVVSVVAPNIPAMYELQFSIPFAGAVLNNINLRLDARTISVILRHANSALVFVDCASRDLILEALSLFPKHHTQRPLLVLIADDSVENADISCSGDFVDTYEGLVSKGDPNFEWVRPISEWDPMILNYTSGTTSSPKGVVHSHRGIFIVSVDTLIDWAVPKRPIYLWTLPIFHANGWSLPWGIAASGGTNICVRKFDAGIIYSLIKRNHVTHMCGAPVVLSMLTNSPDNKPLERPVHILTAGAPPPAAVLHRTEALGFVVSHGYGLTETAGLVVSCAWKEKWNRLPAADRARLKSRQGVRTVGMAEVDVVGPTGESVKRDGVSVGEIVMRGGCVMLGYLKDPEGTASCFKNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESILYGHPAVVEAAVVARPHEYWGETPCAFVSLKAGLKEKPSEEDIIKYCREKMPHYMVPKTVVFKDELPKTSTGKIQKFLLRQIAKEMECRWSLGLQWRPSLSVWVWRSLAVVIVGVLGLRNDDFFDEGKGILTVRHSVSTKFISSLNKRLSKEQCSLIVGTPFGGF 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01199 642 Gene3D - 460 568 IPR045851 -
Vimu1g01199 642 SUPERFAMILY Acetyl-CoA synthetase-like 29 562 - -
Vimu1g01199 642 FunFam 2,3-dihydroxybenzoate-AMP ligase 459 564 - -
Vimu1g01199 642 ProSitePatterns Putative AMP-binding domain signature. 210 221 IPR020845 -
Vimu1g01199 642 CDD ttLC_FACS_AEE21_like 32 557 - -
Vimu1g01199 642 PANTHER ACYL-ACTIVATING ENZYME 21 564 - -
Vimu1g01199 642 Pfam AMP-binding enzyme C-terminal domain 473 550 IPR025110 -
Vimu1g01199 642 Gene3D - 19 459 IPR042099 -
Vimu1g01199 642 Pfam AMP-binding enzyme 41 464 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01199 Vimu-Chr1 9340949 9345885 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01199 21 563 EF-hand Containing Proteins AT1G21540 62.795 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01199 - - gmx:100779857 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01199 1 9340949 9345885 Vimu1g01199 1 9340949 9345885 ECH