Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01077 ATGTATAAGAATCATTTGCAAGAGTTCACATTAAGGTCAGGCAATGAATTTCCTGTGTATCAAACCATCAATGAGGGAGTGCTGCACACTCCAAAGTTTAGGTCGACTGTACATGTGGCTGGGATGAGTTACACTTCCAAATCTACATTTCCCCAGAAAAAGGCTGCTGAGCAGGATGTAGCTAGACTTGCTCTAGAAGCTATCCTTGAGAAGACTAGAAAAGATGGACCCTCTCTTATTTCTCCATTATGCAAGTCTATCATGAATGAATATGCTACTAAATTGCATATTGAGGGACCTTCATACAACACTGTTCAGCAACAACAATCAGGACTTCCGGTTTTCACATCATCTTTAGTTTTCAATGGTACAAGTTACACGGGTGATCTTGCTAAAACCAAAAAGGAAGCTGAGCAGTCGGCAGCACAAGCTGCTATTCTTTCAATTATGGGTGATTCTAGATCTGGATCTAAGCTTATTGAAATAATTAAGTCGAAGTCTATATTTTATGAAGCAATCAAAGGGAAGGGTCTATCTATGTTACAGGCTAGTGAAGTGTCACAAACACCAAAATCAAAAGATATCTCTGTTACACTGGATCCTAAAAAGGAAGTAAAACCAGATTCTGTGGTTGATAAAAGTGAAGTTAAAGTTGAGCATATCAAGTCTTCTGAAATTAATTCTACATGTCAAAAGCAAGAATCCTCCCTTCAAGCCACCCTGCCTTTGCAACCAGGTTCTGCACATTCCATTGGTAATGATTTAAGTTCAGAAAGGCAAGAATCCTCCCTTCAAGCCACCCCACCTTTGCAACCAGATTCAGCACATTCCATTGATAATGATTTAAGTTCAAAAAGGCGGAGGAGGATCAAGAAGAAGGCTAATAAGAAGCAACGGTTGGAATCTTCGTAA 912 0.3947 MYKNHLQEFTLRSGNEFPVYQTINEGVLHTPKFRSTVHVAGMSYTSKSTFPQKKAAEQDVARLALEAILEKTRKDGPSLISPLCKSIMNEYATKLHIEGPSYNTVQQQQSGLPVFTSSLVFNGTSYTGDLAKTKKEAEQSAAQAAILSIMGDSRSGSKLIEIIKSKSIFYEAIKGKGLSMLQASEVSQTPKSKDISVTLDPKKEVKPDSVVDKSEVKVEHIKSSEINSTCQKQESSLQATLPLQPGSAHSIGNDLSSERQESSLQATPPLQPDSAHSIDNDLSSKRRRRIKKKANKKQRLESS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01077 303 SUPERFAMILY dsRNA-binding domain-like 85 156 - -
Vimu1g01077 303 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Vimu1g01077 303 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 83 151 IPR014720 -
Vimu1g01077 303 MobiDBLite consensus disorder prediction 196 211 - -
Vimu1g01077 303 Pfam Double-stranded RNA binding motif 2 66 IPR014720 -
Vimu1g01077 303 Pfam Double-stranded RNA binding motif 85 146 IPR014720 -
Vimu1g01077 303 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Vimu1g01077 303 MobiDBLite consensus disorder prediction 225 278 - -
Vimu1g01077 303 Gene3D - 73 155 - -
Vimu1g01077 303 Gene3D - 1 72 - -
Vimu1g01077 303 SMART DRBM_3 84 150 IPR014720 -
Vimu1g01077 303 SMART DRBM_3 2 69 IPR014720 -
Vimu1g01077 303 MobiDBLite consensus disorder prediction 184 211 - -
Vimu1g01077 303 PANTHER - 1 283 - -
Vimu1g01077 303 MobiDBLite consensus disorder prediction 225 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01077 Vimu-Chr1 7999400 8000998 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01077 - - gmx:100798730 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01077 1 7999400 8000998 Vimu1g01077 1 7999400 8000998 ECH
Vimu1g01077 1 7999400 8000998 Vimu1g01077 1 7999400 8000998 PCT