Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00846 ATGGGCGATCATTTGGCTAGGGCCCAGGATTTCGAGAGCAAGGCAGAGAAGAGGCTCAGCGGTTGGGGTTTGTTTGGCTCCAAATTCGAGGACGCCGCTGATCTCTTCGACAAATCCGCCAATTCCTACAAGCTGGCCAAATCATGTAACCTTCATTTTCTCCAAATCTTTAGATTAATGATTATTAATGGCGATCATGTCGTGTTGGTTACGGTTTGGTATTTTATTAATGTTTCAGGGGACAAAGCAGGAGCCACGTACATCAAATTGGCGAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCCAAGCTTATGTTGACGCTGCGCATTGCTATAAAAAAACTAACATAAATGTTCACATGTGCTTGCTCGTGATCAAATTGTGTAATGCATGCCGGTGCTTAATGGAATTTTCGATGTTGAGGTTCTTTTTGTATCTTTTTAATGCAGAGGCTGTATCTTGCTTAGACAATGCTGTAAATATTTTTTGTGAGATTGGAAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTATATGAGGCTGAACAAAATATCGAGCAGGCAGTAATTTACTTTGAAAGAGCGGCTGATTTTTATGAAAATGAAGAAGTGAACACTTCTGCAAACCAGTGCAAGCAAAAAGTTGCTCAATACTCTGCCCAGCTAGAACAGTCAATTGAGATTTATGAAGAGATTGCTCGCCAGTCTCTAAACAATAATTTACTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTTTGTAGAGGCGATGTTGTTGCTATTAACAATGCACTGGAGCGATATCAGGATATAGATCCAACATTTTCAGGAACACGTGAATATAGATTTCTTTCAGATATTGCTGCTGCAATTGATGAAGAAGATGTTGGAAAGTTTACTGAAGTTGTAAAAGAATTTGATAGCATGACCCCTCTGGACTCTTGGAAGACAACACTTCTTTTGAGGGTGAAGGACAAACTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA 1050 0.399 MGDHLARAQDFESKAEKRLSGWGLFGSKFEDAADLFDKSANSYKLAKSCNLHFLQIFRLMIINGDHVVLVTVWYFINVSGDKAGATYIKLANCHLKLESKHEAAQAYVDAAHCYKKTNINVHMCLLVIKLCNACRCLMEFSMLRFFLYLFNAEAVSCLDNAVNIFCEIGRLSMAARYLKEIAELYEAEQNIEQAVIYFERAADFYENEEVNTSANQCKQKVAQYSAQLEQSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCRGDVVAINNALERYQDIDPTFSGTREYRFLSDIAAAIDEEDVGKFTEVVKEFDSMTPLDSWKTTLLLRVKDKLKAKELEEDDLT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00846 349 CDD SNAP 7 338 IPR000744 GO:0006886
Vimu1g00846 349 PRINTS NSF attachment protein signature 315 335 IPR000744 GO:0006886
Vimu1g00846 349 PRINTS NSF attachment protein signature 284 304 IPR000744 GO:0006886
Vimu1g00846 349 PRINTS NSF attachment protein signature 99 118 IPR000744 GO:0006886
Vimu1g00846 349 PRINTS NSF attachment protein signature 215 238 IPR000744 GO:0006886
Vimu1g00846 349 Pfam Soluble NSF attachment protein, SNAP 79 120 - -
Vimu1g00846 349 Pfam Soluble NSF attachment protein, SNAP 7 49 - -
Vimu1g00846 349 Pfam Soluble NSF attachment protein, SNAP 152 338 - -
Vimu1g00846 349 Coils Coil 174 194 - -
Vimu1g00846 349 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Vimu1g00846 349 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 8 339 IPR000744 GO:0006886
Vimu1g00846 349 SUPERFAMILY TPR-like 81 340 IPR011990 GO:0005515
Vimu1g00846 349 Gene3D Tetratricopeptide repeat domain 5 348 IPR011990 GO:0005515
Vimu1g00846 349 SMART tpr_5 175 208 IPR019734 GO:0005515
Vimu1g00846 349 SMART tpr_5 84 117 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00846 Vimu-Chr1 5726282 5728614 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00846 K15296 - gmx:100794564 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00846 1 5726282 5728614 Vimu1g00846 1 5726282 5728614 ECH
Vimu1g00846 1 5726282 5728614 Vimu1g00846 1 5726282 5728614 PCT