Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00752 ATGAAGATGGAGACACAACCACATAAGAAACACCATTTTGGAACTTCCTACATGCCCTTTCTAGTACAGCATTGTTGTCTTATCATCACCCTCTTAATCTCCACCCTCTTCAGCACCACCACAGCTTTTGATTATGCTGATGCCCTTTCAAAGAGTCTTCTCTATTTCGAAGCACAACGCTCTGGGAGGATACCTTACAATCAGCGTGTCACTTGGAGAGACCATTCTGGCCTCACAGATGGTTTGGAAGAAGGGGTGGACTTGGTGGGAGGGTATTATGATGCAGGGGATCATGTGAAATTTGGTTTACCAATGGCATTCACCATCACAATGCTTTCATGGAGTGCCATAGAGTACAGGCAACAGATTGAAGAGGCAGGTGAATTACAACACACATTGGAGGCCATCAAATGGGGCACTGATTATTTCATCAAAGCTCACACAAGCCCAAATGTCCTATGGGCTGAGGTGGGTGATGGTGACACTGACCATTATTGTTGGCAACGGCCAGAGGACATGACGACTTCACGACGGGCGTTTAAGATCGACGAGAACAATCCCGGTTCAGATCTGGCCGGAGAGACTGCAGCAGCTATGGCAGCTGCATCCATTGTGTTCAGAAAAACAAACACACATTACTCTCACTTGCTTCTGCACCATGCCCTGCAGTTGTTCGAGTTTGGGGACAAGTATAGGGGAAATTATGATGCTAGTGTCGGAGTGGTAAAGAGCTACTATGCGTCGGTGAGTGGATACATGGATGAGTTGTTGTGGGCTGCCACGTGGCTGTACAAAGCCACCGACAACAAAATGTATTTTGAGTACGTTCTTTCCAACGCTCACAAATTTGGTGGCACTGGTTGGTCCATTTCAGAATTCAGCTGGGATGTTAAGTATGCTGGTCTTCAACTCATGCTCTCAAAGCTCTTGAGAGAAGAAAAAGAGAAGAAGCATAGAGATATACTTGAACAATACAGAACAAAAGCAGAATACTACATATGTTCGTGTCTGAACAAAAATAACAACAGCAAGGATAACGTGGAACGAACCCCTGGTGGATTGCTCTATATCCGAGAGTGGAACAACATGCAATATGTTTCAACGGCAGCATTTCTGCTTTCAACATACTCTGATTACCTTGAGAACACAAATGAAAAGCTGAATTGCGAAACGGGCACAGTGGATCATGAAGAAATTCACAGTTTTGCTAAATCACAGGTTGATTACATTTTGGGGTCTAATCCTGTGAACATGAGCTATTTAGTAGGGTATGGTCCTAAGTACCCGAAAAGGGTGCACCACAGAGGGGCATCCATTGTGTCATACAAAAAGAATAAAGGGTTCATAGGGTGTACTCAAGGATATGATAACTGGTATGGTAGCCAAGAACCTAATCCTAATGTTCTTGTTGGGGCTTTGGTTGGAGGGCCTGATGGGAAAGACAATTTTGAGGATCGAAGGAACAATTTTATGCAGACTGAAGCATGCACATATAATACTGCTCCCTTGGTTGGTGTTTTTGCAAAGTTCTTGCATATAGAAAACCACAAAACAGTTCATGACTGTAATTCACTTTTGCTTGCTTCCTTCAAATAA 1596 0.438 MKMETQPHKKHHFGTSYMPFLVQHCCLIITLLISTLFSTTTAFDYADALSKSLLYFEAQRSGRIPYNQRVTWRDHSGLTDGLEEGVDLVGGYYDAGDHVKFGLPMAFTITMLSWSAIEYRQQIEEAGELQHTLEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDLAGETAAAMAAASIVFRKTNTHYSHLLLHHALQLFEFGDKYRGNYDASVGVVKSYYASVSGYMDELLWAATWLYKATDNKMYFEYVLSNAHKFGGTGWSISEFSWDVKYAGLQLMLSKLLREEKEKKHRDILEQYRTKAEYYICSCLNKNNNSKDNVERTPGGLLYIREWNNMQYVSTAAFLLSTYSDYLENTNEKLNCETGTVDHEEIHSFAKSQVDYILGSNPVNMSYLVGYGPKYPKRVHHRGASIVSYKKNKGFIGCTQGYDNWYGSQEPNPNVLVGALVGGPDGKDNFEDRRNNFMQTEACTYNTAPLVGVFAKFLHIENHKTVHDCNSLLLASFK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00752 531 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 409 435 IPR018221 -
Vimu1g00752 531 Pfam Glycosyl hydrolase family 9 45 506 IPR001701 GO:0004553|GO:0005975
Vimu1g00752 531 SUPERFAMILY Six-hairpin glycosidases 43 519 IPR008928 GO:0005975
Vimu1g00752 531 Gene3D - 41 514 IPR012341 GO:0005975
Vimu1g00752 531 PANTHER ENDO-1,4-BETA-GLUCANASE 25 511 - -
Vimu1g00752 531 FunFam Endoglucanase 41 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00752 Vimu-Chr1 4881273 4884434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00752 26 509 Glycoside Hydrolase AT2G32990 74.899 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00752 - - gmx:100817996 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00752 1 4881273 4884434 Vimu1g00752 1 4881273 4884434 ECH