Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00733 ATGGGGTGCTTTCTATTCCCATATGTTATATTCCATTTCCTGCTTTTCAATTTTCCTTTGTACACTTGTTTATGTAACCATCATGATAAATCTTCCTTGTTACAATTCAAAAGCTCAGTTACTGTCAACACTTCACATTATTATTCATGGCTTGATGATGTCTGTTCCTCTTTTTCCTCCAAGACAGAATCTTGGACAAACGGAACAAATTGTTGCGAGTGGAATGGAGTCACATGCGACATGGCTGGCAACGTGATTGGTCTTGACCTTAGCTGCAGTCATCTTCAAGGTCAATTTCATCCCAATAGCACCATCTTTAGCTTAAAACACCTTCAACAACTCAACCTAGCCTACAATGATTTTTCTGGGTCTTCATTATCTTCTGGAATTGGTGATCTTGTGAATCTAGTGCATCTAAATTTATCATACTCTGTATTTAATGGTGATGTTCCCTCCACAATCTCTAACTTGTCAAAGTTAGTATCACTTGATCTCAGTAGCGACTGGGGATCAGTTGATGATCCTATGCCCTTGTACTTGTCTATCAAAATTGATCCATACACTTGGAACAGACTCATTCACAATGCAACTAAGTTAAGAGAGATTCATTTAGATGGCGTGGACTTGTCTTCTATCACAGAGAACTCTTTGTTATTGCTACCCAATCTGTCTTCCACTTTGGTCTCTCTTAGTCTCTCAAACACCAAATTGCATGGGAAATTTCCAAGTGGCGTGCTCTCTTTACCAAATCTTCAAAAATTAGATCTTTCATCTAATGAATGGCTAAGAGGTGAACTTCCAAAATCTAACTTGAGCACTCTGATGAGGCACTTGGATCTCTCTGACACTGCTTTCTCAGGAGAAATTCCTAATTCCATAGGCCATTCGAAGTCTTTTAACTATATCAGTCTTCGTAATTGCAAATTTGGTGGATTGATTCCCTCGTCATTGTTTCATCTAACTCAACTTTCTCTTTTAGATTTATCAGGCAATGGGTTAGTTGGCCCGATTTCATCTACAATCACTCAATTTCCAAAATTACACACTCTACAATTAGCTGGTAACAAGTTAAATGGGACGATTCCAAGTTGGTGTTATTCTCTACCCTTCTTATCACATTTGTTTCTCAATGACAATCAGCTCACAGGCTCAGTCGGTGAATTCTCAACTCATTCTTTAAAGTATTTGGATCTCTCTAGAAACAAACTGCAAGGTGATTTTCCAAATTCAATACTTGAGTTGGAAAATCTTGTTGGCTTGAGTTTGTCATCAAATAACTTAACAGCTCTTGTGGACTCTCACCAATTTTCAAAGCTAAAAAATCTACTTTTACTTGATCTTTCTCACAATGCTTTTATCTCTATCAACTTCGATAACAATGCCGATATCTTACCCAACCTTCAATTTTTATATTTATCCTCCTGTAACATAAGTACTTTTCCCAAATTCTTAGCTAGTGTTAAAAATATAGAAGTATTGGATCTGTCTAATAACAAAATTCGTGGAAGCATTCCCCAAGGATTTCATGAGCAGCTCTTGCACTGGAAGGACATTGAAACTATCGATCTTAGTTCTAACAAGCTGCAGGGAGATCTTCCAATTCCACCCAGTGGCACAGCGCACTTTCTAATATCAAATAATGAGATAAGTGGGGACATTTCTTCAAAAATGTGCAATGCAAGCTCTCTTCGTATACTCAACTTGGCTCACAACAACTTGACAGGCCACATTCCACAATGCCTGGGAACATTCCCTTCTCTTGAAGTGTTAGATTTGCAAATGAACAACCTTCACGGAAACATACCACAGAACTTTCTTGAGGAAAATGCTTTTGAGACAATAAAGTTAAATGACAACAAGTTGAAGGGTCCATTACCGCAGTCTTTGGCTCACTGCACAAAGCTTCAAGTTTTGGACCTTGGAAACAATGACATCGAGGATACATTTCCCCATTGGCTGGAAACTCTGCAAGAGTTACAGGTACTCAGTCTACGATCAAATAAATTTCATGGTGTCATCACTTGTTTCGGTACTGAGCATCCATTTCCCATGTTGAAAATATTTGATGTCTCTGATAACAACTTCAGTGGCCCTTTGCCAGCATCATACATTAAGAACTTTCAAGGAATGATGAACGTTAGTGACAACCAAACTCGTTCGCTATATATGGGTACTCATGGATTATATAATGATTCTATAGTGATCGTAATGAAAGGTCAACACATGAAGCTGGAGAGGATATTAACTGCTTTCACAACTATTGATTTATCATACAACATGTTCGAAGGAGAAATTCCAGAAGCCATTGGAGAATTGATTTCTCTCAAAGGACTGAACCTTTCACACAATGAAATCAGTGGTACCATTCCACAATCTTTGAGTCATTTGAGAAATTTGGAATGGTTGGATCTCTCATGGAACCAGTTGAAGGGTGAGATTCCAATGGCTTTGAGTAGTTTGAATTTCCTGGCGGCGTTGAACCTTTCGCAGAACCAGTTTGAGGGAGTGATACCTACAGGTGGACAATTTATCACATTTGAAAATGATTCTTATGCTGGAAATCCAATGCTGTGTGGAATCCCTTTGTCAAAATCATGCAATGAGGATAAAGAATGGTCATCAATTTCAAGACTTGATGATGAAGAATCAGGATTTGGGTGGAAAGTTGTGACAGTGGGATATGCATGTGGGATGCTTTTTGGGATCATCTCGGGCTGTCATTTATTCTTCATTGGGAAACCTCAATGGCTTGCCACACTTGTTGAAGCTGTGTTCAATGTAAGAATGACAAAACAAAAGGCATAA 2805 0.3843 MGCFLFPYVIFHFLLFNFPLYTCLCNHHDKSSLLQFKSSVTVNTSHYYSWLDDVCSSFSSKTESWTNGTNCCEWNGVTCDMAGNVIGLDLSCSHLQGQFHPNSTIFSLKHLQQLNLAYNDFSGSSLSSGIGDLVNLVHLNLSYSVFNGDVPSTISNLSKLVSLDLSSDWGSVDDPMPLYLSIKIDPYTWNRLIHNATKLREIHLDGVDLSSITENSLLLLPNLSSTLVSLSLSNTKLHGKFPSGVLSLPNLQKLDLSSNEWLRGELPKSNLSTLMRHLDLSDTAFSGEIPNSIGHSKSFNYISLRNCKFGGLIPSSLFHLTQLSLLDLSGNGLVGPISSTITQFPKLHTLQLAGNKLNGTIPSWCYSLPFLSHLFLNDNQLTGSVGEFSTHSLKYLDLSRNKLQGDFPNSILELENLVGLSLSSNNLTALVDSHQFSKLKNLLLLDLSHNAFISINFDNNADILPNLQFLYLSSCNISTFPKFLASVKNIEVLDLSNNKIRGSIPQGFHEQLLHWKDIETIDLSSNKLQGDLPIPPSGTAHFLISNNEISGDISSKMCNASSLRILNLAHNNLTGHIPQCLGTFPSLEVLDLQMNNLHGNIPQNFLEENAFETIKLNDNKLKGPLPQSLAHCTKLQVLDLGNNDIEDTFPHWLETLQELQVLSLRSNKFHGVITCFGTEHPFPMLKIFDVSDNNFSGPLPASYIKNFQGMMNVSDNQTRSLYMGTHGLYNDSIVIVMKGQHMKLERILTAFTTIDLSYNMFEGEIPEAIGELISLKGLNLSHNEISGTIPQSLSHLRNLEWLDLSWNQLKGEIPMALSSLNFLAALNLSQNQFEGVIPTGGQFITFENDSYAGNPMLCGIPLSKSCNEDKEWSSISRLDDEESGFGWKVVTVGYACGMLFGIISGCHLFFIGKPQWLATLVEAVFNVRMTKQKA 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00733 934 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 24 867 IPR046956 -
Vimu1g00733 934 SUPERFAMILY L domain-like 534 863 - -
Vimu1g00733 934 SMART LRR_typ_2 464 486 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 487 510 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 368 391 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 584 613 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 248 269 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 108 133 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 439 459 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 656 678 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 772 795 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 414 438 IPR003591 -
Vimu1g00733 934 SMART LRR_typ_2 796 820 IPR003591 -
Vimu1g00733 934 Gene3D Ribonuclease Inhibitor 539 874 IPR032675 -
Vimu1g00733 934 ProSiteProfiles Leucine-rich repeat profile. 774 797 IPR001611 GO:0005515
Vimu1g00733 934 ProSiteProfiles Leucine-rich repeat profile. 798 821 IPR001611 GO:0005515
Vimu1g00733 934 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 539 624 - -
Vimu1g00733 934 Pfam Leucine Rich Repeat 562 582 IPR001611 GO:0005515
Vimu1g00733 934 Pfam Leucine Rich Repeat 392 413 IPR001611 GO:0005515
Vimu1g00733 934 Pfam Leucine rich repeat N-terminal domain 28 80 IPR013210 -
Vimu1g00733 934 Gene3D Ribonuclease Inhibitor 127 176 IPR032675 -
Vimu1g00733 934 Pfam Leucine rich repeat 752 809 IPR001611 GO:0005515
Vimu1g00733 934 Pfam Leucine rich repeat 613 669 IPR001611 GO:0005515
Vimu1g00733 934 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 269 538 - -
Vimu1g00733 934 SUPERFAMILY L domain-like 50 267 - -
Vimu1g00733 934 PRINTS Leucine-rich repeat signature 487 500 - -
Vimu1g00733 934 PRINTS Leucine-rich repeat signature 393 406 - -
Vimu1g00733 934 SUPERFAMILY RNI-like 227 530 - -
Vimu1g00733 934 Gene3D Ribonuclease Inhibitor 21 126 IPR032675 -
Vimu1g00733 934 Pfam Leucine Rich repeats (2 copies) 465 500 IPR025875 -
Vimu1g00733 934 FunFam Tyrosine-sulfated glycopeptide receptor 1 627 871 - -
Vimu1g00733 934 Gene3D Ribonuclease Inhibitor 388 538 IPR032675 -
Vimu1g00733 934 Gene3D Ribonuclease Inhibitor 180 387 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00733 Vimu-Chr1 4759736 4762540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00733 3 917 Receptor kinase-like Gene Family AT1G47890 37.271 2.06e-158 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00733 - - gsj:114385249 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00733 1 4759736 4762540 Vimu1g00733 1 4759736 4762540 ECH