Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00720 ATGGGTTGGATTTTAGTGTCATACTTGATCTTCTTCCAATCTTTGCTTCTTCATTTTTCTTCATACCAATGTTTGTCGTGCAATCCTGATGACAAATCTGTCCTCTTGCAATTCAAAAATTCAGTTGCTGTTGTGGAGATATCACCTTCGTTTGATCGTTGTGACTCATACTCTCCAAAAACAGCATCTTGGAACAATGAAACAGATTGTTGCGGGTGGGATGGTGTCAGATGTGACTCTGAGTTAGGTCATGTGATTGGCCTTAACCTTTCCTGCAGTCCTCTTAAAGGTGAGCTACTTGGTTCCAATAGTTCCATTTTCAAGCTAAGGCATCTAAAACAACTTAACCTACTTTCTGGTGATTTATATCCATCTCCAATACACTCTGCAATTGGTGATCTTGTCAGCCTCACTGATTTAACTTTATATTACCTTAGAATTAATGGTGATGTTCCCTCCACAATCTCTCACTTGTCAAAATTAGAACATCTTGATCTCACTGTAGAATCTCTTGATTCCACACCGAGACTTGATTCATACACTTGGAACAAACTCATTCACAACGCCACTAATTTAAGGGAAATTTCTTTAAGTGGAGTGAGCATGTCTTCTGTCGGAGAGAGTTCTTTGTCATTGTTAACCAATTTGTCATCCTCTTTGCTTTCTCTCCATCTCACGGATACCAAACTCCAAGGGAAATGGCCAACTGACATCTTCCGTTTACCCAATCTCCAAGAAATACATATCTTACTGAATGAAAACCTGAGAGGTGAACTTCCAAACTCCAACTGGACTTCTCCACTAAAAACCTTGTTTATTTGTCAAACTAATTTCTCAGGAGACATTCCTGATTCCATAGCCCACTTGAAGTCTCTTAACTCACTGTCTCTTTTTGAATCCAATTTTGATGGATTTATTCCACCATCATTGTTTGATCTTACTCACCTTATTTTCTTATATTTATCAGATAATAAATTAGTTGGCCCAATTCCAACCCAAATCATCAAACTCTCCAATTTATTGATCTTAGATTTGAGTGGTAACATGTTAAACGGATCAATTCCTCTTGGGTGTTATTCTTTGCCATCTTTATTCATCCTGAGTCTTAGTAACAATCAACTCACAGGGTCAATTGGTGAATTCTCAACTAATTCTTTGAAATATTTGGAACTTTCTAATAATAAACTGCAGGGCAATTTTCCAAATTCAATATTTGAACTCCAAAGTCTTATTAATTTGAATTTGTCATCATTGAACTTGAATGGTGTTGTGGACTTTCACCGATTTTCAAACCTCACAAAACTAGAGTATTTGGATCTTTCTAACAATAGTTTTCTCTCTGTAAACTTTGAAAATAATTTTCATTACATCTTACTCAACCTTCAATACTTAGATTTATCTTCGTGTAACGTAAGTAGTTTTCCAAATTTCTCGGCACCACATCTGAAATATTTAGATATTTCTTATAATATAATTCATGGAAGCTTTCCCAAAAGGTTTCAGGAGAACCTCTTGCTCTTCTGGAAGGAAATTAGTTACATTGACCTCAGTTTCAACAAGTTGCAAGGAGATCTTCCGATTCTACCAAATGGAATTCGATACTTTACAGTGTCAAATAATGAACTGAGTGGGGACATTTCTTTAGCATTGTGCAACGCAACAATGCTTTACGTAATCAACTTGGCTCACAACAACTTGACAGGACTTATTCCACAATGCTTGGGAACACTTCCTTCTCTTTGGGCGTTGGATTTGCAAGACAACAACCTTTACGGAAGCATACCTGATAACTTTTCTGAAGGAAATGCCTTTAAGACTCTAAAGTTGAATGGAAATCACTTGAAGGGACCGTTACCACAGACTTTGAATCACTGTACAAAGCTTGAAGTTTTGGATCTTGGAAACAATGACATAGAGGATACATTTCCCTCTTGGTTAGAAACTTTGCCAACTTTACAGGTACTCAGTTTGCAGTCAAATAAATTCCATGGTAACATCACTTCTTTAGGCACCAAACTTTCGTTCCCCAGGTTGAGGATTTTTGACATCTCCAATAACTACTTTATCGGACCCTTGCCAACATCATATATCGTCAACTTTCAAGAAATGATGAATGTGAATCACAACCAAACTGGTCCGAAATATATAATGATTGTGATGAAAGGGTTACACAGGGAACTCACGAGGATATTAACTGCTTTGACACTCATTGATTTGTCAAATAATATGTTTGAAGGAGAAATTCCAAAAGCCATTGGAGAGTTGAAGTCTCTCAAAGGGCTTAATCTTTCACACAATAAAATCAGCGGTACCATTCCACTGTCATTGGGTAAATTAACAAAGTTGGAATGGTTGGACCTCTCATGGAACCAATTGAAGGGTGAGATTCCCATGACTCTGACAAATTTGAATTCTCTTGCTGTATTGAACCTTTCACAAAATCAATTGGAGGGAGTGATACCTACGGGTGGACAGTTTAACACATTTGATAATATTTCCTATGTTGGAAATCCAATGCTGTGTGGATTTCCCTTGTCAAGATCTTGCAAAGGGAATAAAGGAAGGTCACAAGGTTCAACACTTGATGAAGAAGAATCAGGATTTGGGTGGAAAGCTATTGTAATCGGTTATGCATGTGGGACGATCTTTGGAATAATATTAGGTTATAATGTATTCTTTGCTGGAAAACCCCAATGGCTTGCAAGACTCGTTGAAGTTGTGTTTAATGTGAGACTGCCCAGAACAAACAATAGAAAGCGTGTAATTCGTTTGGGAAGAAATTAG 2784 0.3721 MGWILVSYLIFFQSLLLHFSSYQCLSCNPDDKSVLLQFKNSVAVVEISPSFDRCDSYSPKTASWNNETDCCGWDGVRCDSELGHVIGLNLSCSPLKGELLGSNSSIFKLRHLKQLNLLSGDLYPSPIHSAIGDLVSLTDLTLYYLRINGDVPSTISHLSKLEHLDLTVESLDSTPRLDSYTWNKLIHNATNLREISLSGVSMSSVGESSLSLLTNLSSSLLSLHLTDTKLQGKWPTDIFRLPNLQEIHILLNENLRGELPNSNWTSPLKTLFICQTNFSGDIPDSIAHLKSLNSLSLFESNFDGFIPPSLFDLTHLIFLYLSDNKLVGPIPTQIIKLSNLLILDLSGNMLNGSIPLGCYSLPSLFILSLSNNQLTGSIGEFSTNSLKYLELSNNKLQGNFPNSIFELQSLINLNLSSLNLNGVVDFHRFSNLTKLEYLDLSNNSFLSVNFENNFHYILLNLQYLDLSSCNVSSFPNFSAPHLKYLDISYNIIHGSFPKRFQENLLLFWKEISYIDLSFNKLQGDLPILPNGIRYFTVSNNELSGDISLALCNATMLYVINLAHNNLTGLIPQCLGTLPSLWALDLQDNNLYGSIPDNFSEGNAFKTLKLNGNHLKGPLPQTLNHCTKLEVLDLGNNDIEDTFPSWLETLPTLQVLSLQSNKFHGNITSLGTKLSFPRLRIFDISNNYFIGPLPTSYIVNFQEMMNVNHNQTGPKYIMIVMKGLHRELTRILTALTLIDLSNNMFEGEIPKAIGELKSLKGLNLSHNKISGTIPLSLGKLTKLEWLDLSWNQLKGEIPMTLTNLNSLAVLNLSQNQLEGVIPTGGQFNTFDNISYVGNPMLCGFPLSRSCKGNKGRSQGSTLDEEESGFGWKAIVIGYACGTIFGIILGYNVFFAGKPQWLARLVEVVFNVRLPRTNNRKRVIRLGRN 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00720 927 FunFam Leucine-rich repeat receptor-like protein kinase TDR 531 850 - -
Vimu1g00720 927 Gene3D Ribonuclease Inhibitor 451 852 IPR032675 -
Vimu1g00720 927 Gene3D Ribonuclease Inhibitor 26 265 IPR032675 -
Vimu1g00720 927 Pfam Leucine rich repeat N-terminal domain 29 79 IPR013210 -
Vimu1g00720 927 ProSiteProfiles Leucine-rich repeat profile. 757 780 IPR001611 GO:0005515
Vimu1g00720 927 Gene3D Ribonuclease Inhibitor 383 450 IPR032675 -
Vimu1g00720 927 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 26 850 IPR046956 -
Vimu1g00720 927 SUPERFAMILY RNI-like 480 826 - -
Vimu1g00720 927 Gene3D Ribonuclease Inhibitor 266 382 IPR032675 -
Vimu1g00720 927 SMART LRR_sd22_2 458 479 - -
Vimu1g00720 927 SMART LRR_sd22_2 625 651 - -
Vimu1g00720 927 SMART LRR_sd22_2 313 339 - -
Vimu1g00720 927 SMART LRR_sd22_2 755 776 - -
Vimu1g00720 927 SMART LRR_sd22_2 779 805 - -
Vimu1g00720 927 SMART LRR_sd22_2 432 452 - -
Vimu1g00720 927 Pfam Leucine rich repeat 733 792 IPR001611 GO:0005515
Vimu1g00720 927 Pfam Leucine rich repeat 605 662 IPR001611 GO:0005515
Vimu1g00720 927 SUPERFAMILY L domain-like 27 262 - -
Vimu1g00720 927 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 267 530 - -
Vimu1g00720 927 SMART LRR_typ_2 779 802 IPR003591 -
Vimu1g00720 927 SMART LRR_typ_2 731 755 IPR003591 -
Vimu1g00720 927 SMART LRR_typ_2 577 601 IPR003591 -
Vimu1g00720 927 SMART LRR_typ_2 649 676 IPR003591 -
Vimu1g00720 927 SMART LRR_typ_2 458 481 IPR003591 -
Vimu1g00720 927 SMART LRR_typ_2 337 361 IPR003591 -
Vimu1g00720 927 SMART LRR_typ_2 803 826 IPR003591 -
Vimu1g00720 927 SMART LRR_typ_2 432 452 IPR003591 -
Vimu1g00720 927 SUPERFAMILY RNI-like 218 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00720 Vimu-Chr1 4666146 4668929 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00720 6 920 Receptor kinase-like Gene Family AT1G47890 36.911 4.34e-153 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00720 - - vum:124840047 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00720 1 4666146 4668929 Vimu1g00720 1 4666146 4668929 ECH