Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00470 ATGGTAGAGGTTCTTCTACGAGCATCACCTCCTCCACCTCACTCTTCTTCTTATCCCAGACAATGCAGGACAGTTTCAGGAAGAACATCGGTAAAGTGCTCGTTGGAAGTCCCAAGTAAGGTTCTGACGAAGCATGTCTTATCTGGGCTTGCTGCTTCTTTGATCTTTATTTCTCCAGCAAACCAGTCTGTTGCAGCAGATCTATCTCGTGCTCAAAATAATATATGTCAAATTGCCAGTGCCAGAGACGCTGCACTTACTTCACCATTTGAGAATGGATCTGATGAAAAGGGTGCAAATCTAATGATGATGAGAGGTATGACAGCCAAGGATTTTGACCCTGTAAGATATGCTGGAAGATGGTTTGAAGTTGCTTCACTTAAACGGGGATTTGCTGGACAAGGCCAAGAAGATTGTCATTGCACTCAGGGTGTATATACATTTGATAGGGAAGTACCATCTATTCAAGTTGACACCTTTTGTGTTCACGGAAGCCCAAATGGGTTTATAACCGGAATTAGGGGAAAGGTTCAATGTGTTTCGGAAGAAGAATTGGATAAAAATGAGACACAGCTAGAGAAGCAGGAGATGATCAAAGAAAAATGCTATCTCCGATTTCCTACATTGCCATTCATTCCTAAGGAACCTTATGATGTGATTGATACTGATTATGACAATTTTTCTCTTGTTTCAGGAGCTAAGGATAAAAGTTTTATCCAGATATATTCAAGGACACCTAACCCTGGACCTGAATTTATTGAGAAGTACAAGTCTTACCTTGCAAAGTTTGGATATGATCCAAGCAAAATTAAAGATACACCACAGGATTGTGAAGTCATGTCCAATAGTCAGCTGGCTGCTATGATGTCTATGTCTGGAATGCAGCAGGCACTTACAAACCAATTTCCTGATCTAGGACTGAACTCTCCTATTGAGTTCAATCCCTTCACTAGTGTATTTGACACTTTGAAGAAGCTTGTTGAGCTTTACTTTAAGTAG 999 0.4064 MVEVLLRASPPPPHSSSYPRQCRTVSGRTSVKCSLEVPSKVLTKHVLSGLAASLIFISPANQSVAADLSRAQNNICQIASARDAALTSPFENGSDEKGANLMMMRGMTAKDFDPVRYAGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDREVPSIQVDTFCVHGSPNGFITGIRGKVQCVSEEELDKNETQLEKQEMIKEKCYLRFPTLPFIPKEPYDVIDTDYDNFSLVSGAKDKSFIQIYSRTPNPGPEFIEKYKSYLAKFGYDPSKIKDTPQDCEVMSNSQLAAMMSMSGMQQALTNQFPDLGLNSPIEFNPFTSVFDTLKKLVELYFK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00470 332 Gene3D - 107 289 IPR012674 -
Vimu1g00470 332 PANTHER LIPOCALIN 101 278 IPR002345 GO:0036094
Vimu1g00470 332 Coils Coil 180 200 - -
Vimu1g00470 332 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g00470 332 SUPERFAMILY Lipocalins 108 288 IPR012674 -
Vimu1g00470 332 Pfam Lipocalin-like domain 115 275 IPR000566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00470 Vimu-Chr1 2842671 2846436 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00470 - - gmx:100787880 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00470 1 2842671 2846436 Vimu1g00470 1 2842671 2846436 ECH