Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00422 ATGAAAACCCAACAACAAAGCATGCCCTCTTCACCCTTATTGCCATTAACGATCTTGACACTGACCCTTCTCTCCCTTACCCTCGCTGCAAATGCTCAAGACTGCACTCAAGCATTCTTCAAACTTGCAGAACAAAAGAACATCTCAGACTGCAAGAGATTACGCACTCTGGGGGCCGAGTTTGCATGGAAACTCCACGGCAACGCTTCTCACAACTCCACCGTCGTTGACATCTTGTTCGGTGCCACACTCAATGCCCCACAGGGGTGGATAGGCTGGGGCGTCAACCCCGGAAGAAGACCGGAGATGGTTGGGACCAAAGCCATCATAGCCGTTAAACGCTCCGATGGAACGTGGCTTGTGGACACATACGACATCACCAAAGAGATCAGAAACGGCTGCAATCTTCTGCCATCAGAAATCGGAATCGTGTTGGATAAGTCGGTTGAGCAAGAGGTCGACAACTTGCACACCATGCATGTGAGATTGAACCTTTCTTCTCATGCCTATAACGTTACGAGGCTGAACCATGTCTGGCAAGTTGGCTATGATATTGAAGGTGGCCGTCCCCTCGGACACCCCAAAACTCTCCGCAACGTCGACAGCACAGAGGTCATCGACTTGACCGACAGCAACGGTCGTAGCACCGGACAGTACCGGAGTTATCTTAGAACGATACATGGAGTCCTAAATATTATAGGATGGGGAACACTTTTGCCGATTGGAATTATAATTGCAAGGTACTTTCGGGTGTTTCCTTTCAGTTACGACCCACTGTGGTTTAACCTGCACATCGGTTGCCAATTAACTGGTTTTCTGGTTGGCACCACCGGATGGGCTATCGGACTGAGCCTGGGCCATTCTTCCAGATACTACACCTTCCGCGATCATCGAACCTATGGCATTCTCATATTCACCTTTAGCACGATCCAGATGTTGGCTTTTCGGTTGAAGCCAAAGGTGACGGATGATTACAGGAAATATTGGAACATGTACCATCATTTTCTTGGTTATGGGCTGTTGGCTATCATATTCATAAACATATTCAAAGGAATTCGGATATTGGAAGGAGGTGATGCATGGAAGTGGGGGTACGTTGCAGATCTTGCCTTTCTGGGTGCCATCGCTTTTGGTTTGGAGGTTTACACGTGGATTAACTTCTTCAGGTTGAAGGACAGACAAAAACGTGAAGATAGACCAAAACGTGAAGATAAAGCCTTTGAACCTAAATCAACCTCTCAAAACCGATTTATAACATAG 1260 0.4738 MKTQQQSMPSSPLLPLTILTLTLLSLTLAANAQDCTQAFFKLAEQKNISDCKRLRTLGAEFAWKLHGNASHNSTVVDILFGATLNAPQGWIGWGVNPGRRPEMVGTKAIIAVKRSDGTWLVDTYDITKEIRNGCNLLPSEIGIVLDKSVEQEVDNLHTMHVRLNLSSHAYNVTRLNHVWQVGYDIEGGRPLGHPKTLRNVDSTEVIDLTDSNGRSTGQYRSYLRTIHGVLNIIGWGTLLPIGIIIARYFRVFPFSYDPLWFNLHIGCQLTGFLVGTTGWAIGLSLGHSSRYYTFRDHRTYGILIFTFSTIQMLAFRLKPKVTDDYRKYWNMYHHFLGYGLLAIIFINIFKGIRILEGGDAWKWGYVADLAFLGAIAFGLEVYTWINFFRLKDRQKREDRPKREDKAFEPKSTSQNRFIT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00422 419 PIRSF UCP037471 7 415 IPR017214 -
Vimu1g00422 419 Pfam Protein of unknown function (DUF568) 103 208 IPR045265 -
Vimu1g00422 419 SMART 561_7 226 352 IPR006593 -
Vimu1g00422 419 CDD Cyt_b561_FRRS1_like 201 381 - -
Vimu1g00422 419 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 19 398 - -
Vimu1g00422 419 Gene3D - 208 388 - -
Vimu1g00422 419 MobiDBLite consensus disorder prediction 398 419 - -
Vimu1g00422 419 ProSiteProfiles Cytochrome b561 domain profile. 191 388 IPR006593 -
Vimu1g00422 419 ProSiteProfiles DOMON domain profile. 57 182 IPR005018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00422 Vimu-Chr1 2556980 2558968 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00422 - - gmx:100791697 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00422 1 2556980 2558968 Vimu1g00422 1 2556980 2558968 ECH