Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00420 ATGTCATCAAAAAGGGAAAGGGAAGTTGATCATAGAGTAAATGATCAAGGGCTTGATAATGAATCGAAAAGGCAGAAGCTGGATGAGGATTCTTCTCCCTCTCCTCCTCCAGTCTCCATTGCGAATCCACTTTCTGGGTTAGCTAATAATTATGCTGACATTGATGAGGAGGAAGAATATGTTCGAAGGGAAAGGGATTCTGTTAATGAGAGTAGGAATGATGGGTCCCAGCACAATGGGCATAGATATAGAGAGGCCGATGATAGTGATGAAGAAGATGATTCACATGAACAATTATTTAGTGGAAGAAACAGTCGCCATGTTGAGGTTCGGAAGGACTGTCCTTATCTTGATACTGTTAATAGACAGGTTTTGGATTTTGACTTTGAAAAATTCTGTTCTGTCTCCCTATCGAATTTGAATGTGTATGCATGTTTGGTTTGCGGTAAGTATTACCAAGGGAGAGGGAAGAAGTCTCATGCATATACGCATAGTCTGGAAGCAGGGCACCATGTTTATATCAATCTCCGCACTGAAAAGGTTTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGACGACATTCGGCATGTCTTAAATCCAAGATTCACTGGAAAAGAAGTTGAACAACTTGACAAAAATAAGCAGTGGTCTAGGGCACTTGATGGTTCTAGTTACCTTCCTGGAATGGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACTATTCAATCGTTAATGAGAGTTACCCCCTTGAGGAATTTTTTCCTCATCCCTGAAAATTATCAACACTGTAAATCTCCACTTGTTCATCGGTTTGGTGAACTCACTAGGAAAATATGGCATGCACGGAACTTTAAAGGACAGGTCAGCCCTCACGAGTTTCTACAAGCAGTGATGAAAGCCAGCAAGAAAAGGTTTAGGATAGGTGCACAATCTGACCCAGTTGAGTTCATGTCATGGCTGCTTAATACTCTACATGCAGATCTTAAGACATCAAAAAAGAATACCAGCATAATCTATGAGTGTTTTCAGGTTCTTTTTTATCCACTCCAATTTTCCTTTCTTTTGGTTGACATGCTGTTACTGGCTGCAGCTATTCACAAGTTGTATGTTGTTTTTACTGTGCTGCAGGGTGAACTTGAGGTTGTGAAAGAGATTCCTAACAAAGGTACCATTGATAGGAAAGAAAACAACGAAGACCAGAACAATGCCGAGAAACTTTTGGATGGGGTAAATGAGCGATACGCATTTGTCAAAGAAACTTCAAAAATGCCATTTCTAATGTTGGGGTTGGACTTGCCACCACCTCCTCTTTTCAAGGATGTGATGGAAAAAAATATAATACCACAGGTTCCACTCTTTAACATTCTGAAGAAGTTTGATGGTGAAACTATCACAGAGGTGGTCCGTCCTCATATAGCAAGGATGAAATATCGAGTTACCAGATTGCCCAAGTATATGATTCTTCACATGCGGAGGTTTACTAAGAATAATTTTTTTGTGGAAAAGAATCCCACATTAGTAAACTTTCCTGTGAAGAACCTGGAGTTGAAGGATTACATTCCCTTGCCAACACCAAAAGAAAATGAGAAATTGCGATCTAAATATGATTTAATTGCTAATGTTGTTCATGATGGCAAACCTGGTGAGGGTTTGTATAGGGTATTTGTACAACGCAAATCAGAAGAACTATGGTATGAGATGCAGGATTTGCATGTCTCCGAAACGCTTCCTCATTTGGTTGCGCTATCAGAAACTTATATGCAGATTTATGAACAGCAAGGCTGA 1809 0.3952 MSSKREREVDHRVNDQGLDNESKRQKLDEDSSPSPPPVSIANPLSGLANNYADIDEEEEYVRRERDSVNESRNDGSQHNGHRYREADDSDEEDDSHEQLFSGRNSRHVEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTGKEVEQLDKNKQWSRALDGSSYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYQHCKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGAQSDPVEFMSWLLNTLHADLKTSKKNTSIIYECFQVLFYPLQFSFLLVDMLLLAAAIHKLYVVFTVLQGELEVVKEIPNKGTIDRKENNEDQNNAEKLLDGVNERYAFVKETSKMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETITEVVRPHIARMKYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANVVHDGKPGEGLYRVFVQRKSEELWYEMQDLHVSETLPHLVALSETYMQIYEQQG 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00420 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 202 IPR013083 -
Vimu1g00420 602 SUPERFAMILY Cysteine proteinases 226 600 IPR038765 -
Vimu1g00420 602 Pfam Zn-finger in ubiquitin-hydrolases and other protein 133 194 IPR001607 GO:0008270
Vimu1g00420 602 MobiDBLite consensus disorder prediction 55 89 - -
Vimu1g00420 602 FunFam U4/U6.U5 tri-snRNP-associated protein 2 114 202 - -
Vimu1g00420 602 SUPERFAMILY RING/U-box 112 206 - -
Vimu1g00420 602 SMART Zf_UBP_1 132 181 IPR001607 GO:0008270
Vimu1g00420 602 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 234 601 IPR028889 -
Vimu1g00420 602 Pfam Ubiquitin carboxyl-terminal hydrolase 234 598 IPR001394 GO:0004843|GO:0016579
Vimu1g00420 602 CDD Peptidase_C19M 115 599 IPR033809 GO:0000245|GO:0006397
Vimu1g00420 602 ProSiteProfiles Zinc finger UBP-type profile. 112 209 IPR001607 GO:0008270
Vimu1g00420 602 Gene3D Cysteine proteinases 203 602 - -
Vimu1g00420 602 MobiDBLite consensus disorder prediction 1 30 - -
Vimu1g00420 602 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 34 600 - -
Vimu1g00420 602 MobiDBLite consensus disorder prediction 1 104 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00420 K12847 - gmx:100792642 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00420 1 2545798 2551139 Vimu1g00420 1 2545798 2551139 ECH