Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00404 ATGGCTATGTTTTTTACCATTGTCTGTTACTCCCATTCTCAGAAGCGGGGTCCGTTGGCGAACGACCTGCCTACTCCGGCGAAGGTGGTGGAGCTTCTAAAGAGTCAGGGGCTGAACCGTGTGAAGCTCTACGACACCGACGCCACCGTGTTAACGGCGTTTGCTAACTCGGGAATCAAGGTGACGGTTGCCATGCCAAACGAGCTTCTCTCGAACGCCGCCGCGGACCAGTCCTACACCGACGCATGGGTGAAAGATAACATCTCTAAATACTACCCAACCACCCAAATTGAAGCCGTCGCTGTGGGCAACGAAGTGTTTGTTGACCCCAATAACACGACCAAGTTTCTCGTAGAGGCAATGAAGAACGTGTTAGCCTCCTTAACCAAGTACAACCTCAACACCAACATCAAAATCTCCTCTCCCATCGCACTCTCCGCGCTCCAAAGCTCCTTCCCCGCATCATCCGGTTCCTTCAAATCCGAACTAGTCGAACCGGTTATTAAACCCATGCTCGACCTCCTCCGCCAAACCGGTTCCCCTCTCATGGTGAACGCCTACCCGTTTTTCGCTTACTCAGCAAACGCTGATAAAATTTCCTTGGACTACGCTCTTTTCAGAGAGAACGCCGGCGTGGTTGATTCCGGTAACGGTTTGAAATACACCAACCTTTTCGACGCTCAAATCGACGCAGTTTTCGCTGCCATGTCAGCGCTTCAATACAACGACGTTAAGATCACAGTTTCCGAGACGGGTTGGCCTTCCGCGGGAGACTCGAATGAAATTGGAGCGGGTCCAGAGAATGCTGCTGCGTATAACGGGAACTTGGTTCGGCGCGTGTTGGGCCAGAACGGGACCCCCTTGAAGCCCAATGAGTCCGTCGACGTTTTTCTCTTCGCGCTTTTCAACGAGAATCAGAAAACAGGGCCTACGTCCGAAAAAAATTACGGATTGTTTTACCCAAGCGAAAAGAAGGTTTACGATATTCCGCTGACGGCGGAGGGTGTTAAGAACGCGCCATCATCAGGCGTGGGGAAGAACCAGGTTCCGGCGAGTGGGGACGTATCGACGACGTCGCGTCAGGGTCAGACCTGGTGCGTGGCGAATGGCGGTTCTTCCGAGGAGAAGCTTCAGAACGGTCTTAACTACGCCTGTGGAGAGGGTGGAGCTGATTGCAGTAGCATTCAACCAGGTGCCACGTGTTACAATCCTAACACGTTGGAGGCGCATGCTTCTTACGCTTTCAACAGTTACTATCAGAAGAAAGCACGTGCCGCTGGCACCTGCGATTTTGGTGGAACCGCCTATGTTGTCACACAGCCTCCTAAGTATGGGACCTGCGAATTTCCCACTGGATACTGA 1362 0.5257 MAMFFTIVCYSHSQKRGPLANDLPTPAKVVELLKSQGLNRVKLYDTDATVLTAFANSGIKVTVAMPNELLSNAAADQSYTDAWVKDNISKYYPTTQIEAVAVGNEVFVDPNNTTKFLVEAMKNVLASLTKYNLNTNIKISSPIALSALQSSFPASSGSFKSELVEPVIKPMLDLLRQTGSPLMVNAYPFFAYSANADKISLDYALFRENAGVVDSGNGLKYTNLFDAQIDAVFAAMSALQYNDVKITVSETGWPSAGDSNEIGAGPENAAAYNGNLVRRVLGQNGTPLKPNESVDVFLFALFNENQKTGPTSEKNYGLFYPSEKKVYDIPLTAEGVKNAPSSGVGKNQVPASGDVSTTSRQGQTWCVANGGSSEEKLQNGLNYACGEGGADCSSIQPGATCYNPNTLEAHASYAFNSYYQKKARAAGTCDFGGTAYVVTQPPKYGTCEFPTGY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00404 453 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 437 IPR044965 GO:0004553|GO:0005975
Vimu1g00404 453 SMART X8_cls 364 449 IPR012946 -
Vimu1g00404 453 MobiDBLite consensus disorder prediction 341 357 - -
Vimu1g00404 453 MobiDBLite consensus disorder prediction 338 357 - -
Vimu1g00404 453 SUPERFAMILY (Trans)glycosidases 17 329 IPR017853 -
Vimu1g00404 453 Gene3D Glycosidases 8 338 - -
Vimu1g00404 453 Pfam X8 domain 364 435 IPR012946 -
Vimu1g00404 453 FunFam Glucan endo-1,3-beta-glucosidase 4 359 452 - -
Vimu1g00404 453 Pfam Glycosyl hydrolases family 17 17 329 IPR000490 GO:0004553|GO:0005975
Vimu1g00404 453 Gene3D - 358 449 - -
Vimu1g00404 453 FunFam Glucan endo-1,3-beta-glucosidase 3 14 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00404 Vimu-Chr1 2418768 2420282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00404 17 442 Glycoside Hydrolase AT5G55180 73.005 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00404 - - gmx:100803406 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00404 1 2418768 2420282 Vimu1g00404 1 2418768 2420282 ECH