Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00401 ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAAGAACACCAGGCGATCTACAAGGACTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAATTTTTCTCTATGTCCAACTTGTCTCGCCAAGATCTTAAGCAGGTGTGGGCTATTGCAGATACAAAGCGGCAAGGATATCTTGGTTTCTCTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGTACTCAATAACACCTGATTTGCCGACTAGTGATGTTGATTTTACAAATCTGGAACCTCCTGTAATGGATGGTTTGGATGCATTACTAACTGTGCCTCTTTCCTCAGTGACATCAATAATCGATGGCTTGAAGAGACTCTACCTTAACAAGTTGAAGCCGTTAGAAGCCACTTACCGTTTTAATGATTTTGTATCACCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGCAAGTGA 573 0.4206 MEFDPIPIGSCSKEHQAIYKDWFNYADSDSDGRITGSDATKFFSMSNLSRQDLKQVWAIADTKRQGYLGFSEFIIAMQLVSLAQSGYSITPDLPTSDVDFTNLEPPVMDGLDALLTVPLSSVTSIIDGLKRLYLNKLKPLEATYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00401 190 Pfam Cytoskeletal-regulatory complex EF hand 18 80 IPR000261 GO:0005515
Vimu1g00401 190 Gene3D - 112 168 - -
Vimu1g00401 190 SMART eh_3 8 103 IPR000261 GO:0005515
Vimu1g00401 190 SUPERFAMILY EF-hand 12 96 IPR011992 -
Vimu1g00401 190 PANTHER EH DOMAIN 15 190 - -
Vimu1g00401 190 CDD EH 19 85 IPR000261 GO:0005515
Vimu1g00401 190 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vimu1g00401 190 Pfam N-terminal EH-domain containing protein 128 160 IPR031692 -
Vimu1g00401 190 Gene3D - 10 108 - -
Vimu1g00401 190 ProSiteProfiles EH domain profile. 15 96 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00401 Vimu-Chr1 2391317 2400066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00401 1 189 EF-hand Containing Proteins AT3G20290 62.500 5.41e-93 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00401 K12483 - gmx:100804468 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00401 1 2391317 2400066 Vimu1g00401 1 2391317 2400066 ECH