Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00399 ATGTTTGTCCATAAGGTTTTGTCGCGCGTGTCCACCACCTTTTCCCGGAGCTCTTTTCTCTCTGCTTCCAAAACTCCCCAACACTTCTCCAATCACTTACATTCCCTCATTCACCAATCTCCCAACAAGTTGATTCCTGTTCAAGTCAATTTGTCACTGCTACGGATAAGTTCATCATCAACTCCAAGATGTGGGTTTTCTTCATCAGCTTCAAGTGAAACTAATGACAAGGAAAAAGGGAAGAATATGGATATTGAAGATTCTACAAATGATAACCCTGATACAGCAAACGAAAAGGTCAATAATTTTGAACAGGCCGGACAAGCTAAATCTGCAGATAAAACAGAGGAATCAACTTCTATTTTGGATTCTCAATCTCAAACTGTAAAAGGAAGGAGGAGAGGTTTCAAACGAACAGCATTTTCTGATTCTGATTCAGATTCAGATTCAGAGAATGAATATCTGTCCAAGGATGATTTGATTAAACTTGTGGCTGAGAAAGAAGAACTTTTGAAGTTAAAGCACAAGGAGATTGAACAAATGCAGGATAAAGTTTTGCGTACATATGCAGATATGGAGAATATCATGGATAGGACACGACGTGAATCAGAGAATTCGAAAAAGTTTGCTGTACAGAACTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGTTTTTCAAAAATTGATACACCTAGTGACTCTGCTGAAGCGGTAAAACTTCTGGAAACACTTCTGCAAGGTGTTGAAATGACCGAGAAACAATTATCAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACGAATGAGCCCTTTGATCCACACAGACATAATGCCGTCTTTCAAATCCCTGATGGTTCTAAGCCTCCAGGAACCGTTGCGGCTGTTCTGAAGGCAGGATACATGCTTTATGATCGTGTCATTCGCCCAGCGGAAGTTGGTGTGACGCAAGCACTGAAGGAAGATTAG 1008 0.4008 MFVHKVLSRVSTTFSRSSFLSASKTPQHFSNHLHSLIHQSPNKLIPVQVNLSLLRISSSSTPRCGFSSSASSETNDKEKGKNMDIEDSTNDNPDTANEKVNNFEQAGQAKSADKTEESTSILDSQSQTVKGRRRGFKRTAFSDSDSDSDSENEYLSKDDLIKLVAEKEELLKLKHKEIEQMQDKVLRTYADMENIMDRTRRESENSKKFAVQNFAKSLLDVADNLGRASSVVKESFSKIDTPSDSAEAVKLLETLLQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAVFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTQALKED 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00399 335 CDD GrpE 179 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 MobiDBLite consensus disorder prediction 59 153 - -
Vimu1g00399 335 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 166 274 IPR013805 -
Vimu1g00399 335 PANTHER GRPE PROTEIN 59 331 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 275 330 IPR009012 GO:0006457
Vimu1g00399 335 Pfam GrpE 164 329 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 Gene3D - 156 273 IPR013805 -
Vimu1g00399 335 MobiDBLite consensus disorder prediction 74 88 - -
Vimu1g00399 335 Hamap Protein GrpE [grpE]. 97 330 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 ProSitePatterns grpE protein signature. 285 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 FunFam GrpE protein homolog 274 330 - -
Vimu1g00399 335 FunFam GrpE protein homolog 158 273 - -
Vimu1g00399 335 Coils Coil 164 184 - -
Vimu1g00399 335 MobiDBLite consensus disorder prediction 59 73 - -
Vimu1g00399 335 Gene3D Head domain of nucleotide exchange factor GrpE 274 329 IPR009012 GO:0006457
Vimu1g00399 335 PRINTS GrpE protein signature 282 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 PRINTS GrpE protein signature 309 328 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 PRINTS GrpE protein signature 186 202 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu1g00399 335 MobiDBLite consensus disorder prediction 136 153 - -
Vimu1g00399 335 MobiDBLite consensus disorder prediction 94 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00399 Vimu-Chr1 2378898 2384154 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00399 K03687 - gmx:100803396 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00399 1 2378898 2384154 Vimu1g00399 1 2378898 2384154 ECH