Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00383 ATGGAACTCTGCACTCGAACCTTTACAAGTTTTCTTCTTTCCAATTCGTTTTTCTCTTCAAACAAAATTCTTCTCCTTGCTAATGCCAACACTTCAGTCTTCAAATTCAATTCCCTTAAACTTTTTGCACCTCATGATCATCACTTTCAACCCTTTATATCTCGTTACAATTCTTTCTCTTCCCCTTTCATAGCCTCAGCTGCTTCTTCCTCTTCCTCGGTCGCAGTTGGCACAGAACAGGACAGTCTTCCAGCAGAACTGAAGGTTACAGAAACAGAGCAACTCAAATCCACTGTTAAATTGCATGTGGAGGTACCACCATTGGTATGTGAGGATTGTTACAAAAGGGTCATAGCAGAGTTTATGAAGCAAGCAAAGGTCCCTGGATTTCGTCCGGGAAAGAAAGTTCCAGAAGAGATTCTTATTGGTTATGTTGGGAGACAAAATGTCCAGAAGGCTACTATTGAATCTATTTTAAGAAGGACACTTTCACATGCTATGACATCGGTTACTGGGAGGGCTTTGCAGGACTCAGTACGCATAGTTACTAAGTTTTCTGAGATGGAGGAGACATATTCTTCTCTTGGGTCTCTTAGATATGATGTGATTGTTGATGTTGCACCAGAAATCAAATGGATTCCTGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATAGATGCTCAAATAGCATCTGAACAAGAATTTAAAAGGCGATACAAGTCCATTGGTGCACTGAAAGTGGTTACTGATAGAGGTTTACAGGTTGGTGATGTTGCTGTTCTTGACATCTCAGCAACAACCATTGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCAGCTGAAAGTAAAGGCTTTAATTTTGATACCGAGGATGGAGACAAGGTATTACCAGGTTTCCTTGATTCAATAATTGGAATTCATCGAGGTGAATCAAAGTCTTTCCCTCTTGTATTTCCTGAAACTTGGAAGCAAGAAAATCTTCGAGGTGTTCATGCTCAGTTTAATGTTGAATGCAAAGAACTTTTTTACAGAGATTTGCCAGAACTGGATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCAGCACAGTGGAGCAGGTCAAAGACTTATTGTTACAGAGATGCCTAGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGATCAGATTTCTAAGATGGTTGAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGCAAAAATGAAACTAAATGAGCAACAGCTGGCATCTCTCTCAAGTCCAAAGGCTGTGAACCAATATCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAATCTGGCAGTGGGTGATATATATAGGCGTGAAAATCTGCAGTTTGCTACCGAGGATCTCGTCAAAGAGGTTGAGAATTCCGTTGCTGAATTCAAACGTCAAAATCAAGAATATGATGAGGAACGGGTGAAGGATCAGGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGTAGAGATTCAATACATTACTAGATGA 1620 0.3901 MELCTRTFTSFLLSNSFFSSNKILLLANANTSVFKFNSLKLFAPHDHHFQPFISRYNSFSSPFIASAASSSSSVAVGTEQDSLPAELKVTETEQLKSTVKLHVEVPPLVCEDCYKRVIAEFMKQAKVPGFRPGKKVPEEILIGYVGRQNVQKATIESILRRTLSHAMTSVTGRALQDSVRIVTKFSEMEETYSSLGSLRYDVIVDVAPEIKWIPDNNAYKNLKIVVEIDSDIDAQIASEQEFKRRYKSIGALKVVTDRGLQVGDVAVLDISATTIDQDESNVKSIPSAESKGFNFDTEDGDKVLPGFLDSIIGIHRGESKSFPLVFPETWKQENLRGVHAQFNVECKELFYRDLPELDDSIADKLLPGCSTVEQVKDLLLQRCLEVEQTAREQATDNAILDQISKMVEVDIPQSLFEEQGRQLYGANLLEIQAKMKLNEQQLASLSSPKAVNQYLEHQKENITNLIKQNLAVGDIYRRENLQFATEDLVKEVENSVAEFKRQNQEYDEERVKDQVQEILEGAKVLEWLREHVEIQYITR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00383 539 SUPERFAMILY Trigger factor ribosome-binding domain 87 215 IPR036611 GO:0006457|GO:0015031
Vimu1g00383 539 Pfam Bacterial trigger factor protein (TF) 89 236 IPR008881 GO:0006457|GO:0015031
Vimu1g00383 539 FunFam Trigger factor 253 355 - -
Vimu1g00383 539 Gene3D - 248 355 IPR046357 GO:0003755
Vimu1g00383 539 FunFam Trigger factor 87 210 - -
Vimu1g00383 539 Gene3D - 218 534 IPR037041 GO:0006457|GO:0015031
Vimu1g00383 539 FunFam Chloroplast trigger factor 326 534 - -
Vimu1g00383 539 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 357 535 IPR027304 -
Vimu1g00383 539 Coils Coil 489 509 - -
Vimu1g00383 539 SUPERFAMILY FKBP-like 253 358 - -
Vimu1g00383 539 Hamap Trigger factor [tig]. 87 535 IPR005215 GO:0015031
Vimu1g00383 539 Gene3D - 85 210 IPR036611 GO:0006457|GO:0015031
Vimu1g00383 539 Pfam Bacterial trigger factor protein (TF) C-terminus 371 528 IPR008880 GO:0006457|GO:0015031
Vimu1g00383 539 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 54 521 IPR005215 GO:0015031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00383 Vimu-Chr1 2271981 2277565 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00383 K03545 - gmx:100805543 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00383 1 2271981 2277565 Vimu1g00383 1 2271981 2277565 ECH