Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00382 GAAGGTCTCAGTCCATGCATGTATACCACTCCGAAAGCATTTGAACAATCACTTCGCCAAGGAGAGATACACAAATGGATCATAACAGTAATTCGCCAAGAACACCGAGTTTTCGGCAAAGGAGACGCTCAAATGAGTTATGCTGCTGCAAGACCTATTCCTGCAGAGATAAACAAATCAAATGGAAACATTTTACTGGTGGATGATAAATATAAATACAGATCAATGTGGATTCGTGCATACTCATCTCTGTGGATGTTAGCTAGTGTCTCACTTATCATTTACTTAGGTCATCTTTACATCTGGGCCATGGTTGTTGTTATCCAAATATTCATGGCCAGTGAGCTCTTCAATCTACTTACAAGAGCAACTCAAGATAGACGTCTCCCGAAGTTTAAGTTCTTGAACTGGCACTTTTTCTTCACAGCAATGCTTTTCGTATATGGCCGTATTCTCAGTCAGCAACTTGTGAATACTGTGACCTCAGACAAATTCTTGTATAGGCTTGTGAGCAATCTGATCAAGTATCAGATGGTTATATGTTACTTCCTATATATTGCAGGTTTTGTATGGTTTATTCTTTCATTGAAGAAAAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTCATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTCAAGGAATATTCTGGTTTATTTTCCCTGCATCCCTAATTGCTATGAATGACGTTGGCGCATATTTCTTCGGTTTCTATTTTGGGAGAACACCTCTGATCAAGCTTTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCATCTGTTGCCACTATGATTGCTGCGTTTACATTTGCCTACTTCTTGGGTCGCTTCCAATGGCTAACATGTCCAAGGAAGGACCTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGAGTACATTCCATTGCCAGGACTGATTTCTCATTCGCTTCCTTGGAAAGAGATACCAGTTTTGCCAGTACAGTGGCATGCCTTGTGGTTGGGACTATTTGCGTCAATCATAGCACCATTTGGAGGTTTTTTTGCCAGTGGTTTCAAAAGAGCTTTTAAAATCAAAGACTTTGGTGACAGTATACCGGGACATGGCGGATTTACAGACAGAATGGACTGTCAGATGGTAATGGCTGTTTTTGTCTACATTTACCATCAATCATTTGTTGTCGTCGAAGACTATTCAGTAGAAATGCTTTTGGACCAGATATTGAGGAACCTTGGTTCAGAGGAGCAGCTGGCTCTCTACGCAAAACTCGGACATATATTGCAAGAAAGGCGTTTATGA 1347 0.4076 EGLSPCMYTTPKAFEQSLRQGEIHKWIITVIRQEHRVFGKGDAQMSYAAARPIPAEINKSNGNILLVDDKYKYRSMWIRAYSSLWMLASVSLIIYLGHLYIWAMVVVIQIFMASELFNLLTRATQDRRLPKFKFLNWHFFFTAMLFVYGRILSQQLVNTVTSDKFLYRLVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYAWTHMILIVVFTQSAFTVANIFQGIFWFIFPASLIAMNDVGAYFFGFYFGRTPLIKLSPKKTWEGFIGASVATMIAAFTFAYFLGRFQWLTCPRKDLSTGWLQCDPDPIFKPEYIPLPGLISHSLPWKEIPVLPVQWHALWLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVVEDYSVEMLLDQILRNLGSEEQLALYAKLGHILQERRL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00382 448 Pfam Cytidylyltransferase family 78 408 - -
Vimu1g00382 448 PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 55 446 IPR016720 GO:0004605
Vimu1g00382 448 PIRSF CDP-DAG_synth_e 32 448 IPR016720 GO:0004605
Vimu1g00382 448 ProSitePatterns Phosphatidate cytidylyltransferase signature. 366 392 IPR000374 GO:0016020|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00382 Vimu-Chr1 2267065 2271522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00382 55 446 Lipid Metabolism Gene Families AT4G26770 77.975 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00382 K00981 - gmx:100805363 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00382 1 2267065 2271522 Vimu1g00382 1 2267065 2271522 ECH