Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00380 ATGGCCAACGAAAACGAACCTGCGAAGCTACTGTTACCATATCTTCAACGCGCCGATGAATTGCAAAAGCACGAACCACTCGTCGCTTATTACTGTCGATTATATGCGATGGAACGGGGGTTGAAGATTCCGCAAAGTGAGCGCACAAAGACCACTAATGCTCTTCTTGTCTCGCTCATGAAGCAGCTTGAGAAGGATAAAAAGTCCATCCAGATAGGGCCTGAGGACAATTTATATCTCGAGGGTTTTGCTTTGAATGTGTTTGGAAAGGCAGACAAACAAGATCGTGCTGGAAGAGCAGATTTGAATACAGCGAAAACATTTTATGCTGCCAGCATCTTTTTTGAGATTCTTAATCAATTTGGAGCAGTTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGTGTGGAAAGCAGCTGATATAAGAAAAGCTTTGAAAGAAGGAAGAAAGCCCACAGCTGGTCCGCCTGCTGGTGATGAGGATCTGTCAATTCCATTCAGTTCTTCAAGTGATAGATATGACCCTGGGACTACTGAAACTACAGTTTCCAATCCTGGACCAGAATCTGATTCATCACCTAGTTATCATAATCCTGTCAATTACCAGAATCCAAACATTCATCCGGCTCCTAAATTTCATGATACTGTTAATGAACAGCATTCTGCAAATATTCCACCATCTATGCAATTTCATGACAGAGTAGATAACAACAAGCATTCTTCTGTTGTTTCTCCATCATCTCACTCTTATACACCTGGAGTTTATCCTTCCCAAGACTATCCTCCTCCTCCTCCTCCACCTTCCCAAGACTATCATCCTCCTCCACCTTCCCAAGACTATCATCCTCCTCCACCTTCCCAAGACTTTCATTCTCCTCCACCTTCCCAGGACTATCATTCTCCTCCCCCTTCCCAGGACTATCATTCTCCTCCCCCTTCCCAGGACTATCATCCTCCACCACCTTCCCAAGATTATCATCCTCCACCGTCATCCCAAGATTACCATCCTCCACCTGCCAGATCAGAAAGTTCTTATCCCGAACATTACAACCATCAGCAATACTCATCGGAGAATTCACAGCATTTAGGGCCTAACTACCCTTCTCATGAAAATTCCTCATATTCCTATCCCCATTTTCAGTCTTATCCAAGTTTTTCAGAAAGCAGCATCCCATCAGTCCCATCAAACTATACTTATTATCAAGGGTCGGATGCTTCATATTCTTCCCAGTCAGCTCCGCTAACTACAAGCCATTCATCAAGTGCTCATCACAGCTCTAGCAGCAGGAATGGAACTATTGTGGAACCTAAATCAACTTCTCAGACATACCATTATGACAGTAACTACCAGCCAGCACCTGAAAAAATAGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGTGCACTTGCATTTGATGATGTCTCAATTGCAGTAGACTACTTGAAGAAATCACTTGAGTTGCTGACAAATCCATCCGCTGGCCAGTAA 1494 0.4398 MANENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNALLVSLMKQLEKDKKSIQIGPEDNLYLEGFALNVFGKADKQDRAGRADLNTAKTFYAASIFFEILNQFGAVQPDLEQKQKYAVWKAADIRKALKEGRKPTAGPPAGDEDLSIPFSSSSDRYDPGTTETTVSNPGPESDSSPSYHNPVNYQNPNIHPAPKFHDTVNEQHSANIPPSMQFHDRVDNNKHSSVVSPSSHSYTPGVYPSQDYPPPPPPPSQDYHPPPPSQDYHPPPPSQDFHSPPPSQDYHSPPPSQDYHSPPPSQDYHPPPPSQDYHPPPSSQDYHPPPARSESSYPEHYNHQQYSSENSQHLGPNYPSHENSSYSYPHFQSYPSFSESSIPSVPSNYTYYQGSDASYSSQSAPLTTSHSSSAHHSSSSRNGTIVEPKSTSQTYHYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSAGQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00380 497 MobiDBLite consensus disorder prediction 148 450 - -
Vimu1g00380 497 MobiDBLite consensus disorder prediction 164 205 - -
Vimu1g00380 497 MobiDBLite consensus disorder prediction 240 255 - -
Vimu1g00380 497 Gene3D - 4 152 IPR023175 -
Vimu1g00380 497 MobiDBLite consensus disorder prediction 346 449 - -
Vimu1g00380 497 Gene3D Immunoglobulin FC, subunit C 453 492 - -
Vimu1g00380 497 MobiDBLite consensus disorder prediction 257 336 - -
Vimu1g00380 497 Pfam Vta1 C-terminal domain 454 491 IPR041212 -
Vimu1g00380 497 Pfam Vta1 like 13 148 IPR039431 -
Vimu1g00380 497 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 309 493 IPR044538 GO:0032511
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00380 1 118 Glycosyltransferase AT2G31960 25.984 1.10e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00380 K12199 - gmx:100783739 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00380 1 2251556 2254097 Vimu1g00380 1 2251556 2254097 ECH