Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00352 ATGGAGTCCCCACAGTCTGTTGTGTCACCATTCAAGAACTCTGTCTTGGGTGAGGCTGAGAAGTACAAGTCTGATATTTACAAGCAAAGCTCGGGTCCTTTCTCTAAGGACATTGAAGTCAATGGAAAGGAAGCTGTCAGGTCCAATTCAGAGGACTTCATTGGTGCTGTTGATGTTTACATTCATCAGGCCAGGGACATTCATAACATCTGCATATACCACAAGCAAGATGTTTATGCTAAAATTAGCCTGACTAGTAATCCCGAGAATACTGTCTCTACCAAGACCATCAATGGAGGAGGAAGGAATCCTGTCTTTAATGAGAATCTTCGTCTAAGCGTTAGGACAGTTGATTCTGCTGTAAAATGTGAAATCTGGATGCTGAGCAGGGTGAAGAATTATCTTGAAGATCAATTGCTTGGCTTTGCTTTGGTGCCTTTGTCAGAAGTGCTGATGAAGGACGGCAAACTAGAGAAAGAGTTCTCTCTTTCCTCAACTGATCTATTCCATTCACCGGCCGGTTTTGTGCAGTTGTCTCTCGCATACACTGGCACTTCGCCTGATGTTATTGCAATTTCTGCAATGCCTACTGAGTTGGCTGCAAATGGCACTGACAAGGACTCTGAAACTTGCGAATCACTGGTCAGAGATTTAGACAAGATTGAATTCCCGGATCCAAAAATTGTAAATGAAGACCACTTGATGGTTTCAGAATATTTCGGTATTCCATGTGAGGAGAGTCAGTGTTCTGGCAGCTTGACCACTAATGATACTGAAAATCTGAGTTCTGAAGCAGGTGTTCAGCTTGTGGAGAGCTTCTCAGCATGCAGTGTTGAGTCTGCACAACCTCCTAAGGTTGATTCTCCACCTACAAGTGTGTCAACAAATGGAGTTTCATCTCCTTCAGTGGCTGCAAGCTCAGACTCATCTGATGCTGCTGCTGCTGTTGCTGCTGCTTCCAAGTCTCCAAATCAGGAACAAGTTTCGGCCAACAAAGAGAAAAATGGGGAGGTCAACAATGGTGAGACCGATTCCTCAAATGGGGTGGTGAACGAGTCATTCCCTAAGCCTGTTGTGACCGTTAACATCGAGCCTGAGTCAAATGTGGTGCAGCAGGACATTGTAGACATGTACATGAAAAGCATGCAGCAGTTCACAGAGTCTTTGGCGAAAATGAAGCTTCCTATGGACTTTGAAAGTGGACCAACTAGTTCAGGAAACTCAAGCTCCGAACAGAAGATACAGACACCAAAGAGCTCTAACTCCCGTGTCTTCTACGGCAGCAGGGCTTTCTTCTGA 1299 0.4488 MESPQSVVSPFKNSVLGEAEKYKSDIYKQSSGPFSKDIEVNGKEAVRSNSEDFIGAVDVYIHQARDIHNICIYHKQDVYAKISLTSNPENTVSTKTINGGGRNPVFNENLRLSVRTVDSAVKCEIWMLSRVKNYLEDQLLGFALVPLSEVLMKDGKLEKEFSLSSTDLFHSPAGFVQLSLAYTGTSPDVIAISAMPTELAANGTDKDSETCESLVRDLDKIEFPDPKIVNEDHLMVSEYFGIPCEESQCSGSLTTNDTENLSSEAGVQLVESFSACSVESAQPPKVDSPPTSVSTNGVSSPSVAASSDSSDAAAAVAAASKSPNQEQVSANKEKNGEVNNGETDSSNGVVNESFPKPVVTVNIEPESNVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQKIQTPKSSNSRVFYGSRAFF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00352 432 PANTHER EXPRESSED PROTEIN 1 432 - -
Vimu1g00352 432 MobiDBLite consensus disorder prediction 400 422 - -
Vimu1g00352 432 CDD C2 57 163 - -
Vimu1g00352 432 MobiDBLite consensus disorder prediction 396 422 - -
Vimu1g00352 432 Pfam C2 domain 56 161 IPR000008 -
Vimu1g00352 432 SMART C2_3c 56 159 IPR000008 -
Vimu1g00352 432 MobiDBLite consensus disorder prediction 320 353 - -
Vimu1g00352 432 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Vimu1g00352 432 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 185 IPR035892 -
Vimu1g00352 432 Gene3D C2 domain 51 198 IPR035892 -
Vimu1g00352 432 MobiDBLite consensus disorder prediction 280 353 - -
Vimu1g00352 432 MobiDBLite consensus disorder prediction 280 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00352 Vimu-Chr1 2071022 2072320 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00352 - - gmx:100781587 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00352 1 2071022 2072320 Vimu1g00352 1 2071022 2072320 ECH