Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00337 ATGGCACTCGAATCTTGGGTTCTGAGTTATCAAAGCTTCAACCCCAGTTCCAGATTGTTTTACACTGCACATGAAAATCGGCGAAAGAGCATACCAATCAACTTTTTGGGTAGAAACAGTAGATATTCATTTCCCTTTGTTTCCAGTTGTGTTGGGCCATCCACTTTTTCAACCCTGCAGGTTTCAAGTTTTGGGGCAGATGCCAAGTTACTAGATAGAACTCGGTTGAGGTGTTTAGATGGTAGCAGTGATGGTTTGAGTGAGACAAATGCTGTTTCCGGAACCAATTTGAAGTTTGTGCATGAATTGTTGAAGAGGGGAATCATCCTAGCTGCAACTGTTTGTGGGGTTTTGGTGTTTGGATGTCCACGAGTTTTCGCAGTTGAAGATGTTGTAGATGCAGGATATGGCGTTATTGGACAGAGCATACTTTTGCTTAGAAATACTTGGCCTAAAGTGTTACAAGTTCTTCGCATATTCAAGGAGCAAGGTTTGGTGCTGGCACTGCTTTTGGGCATTTCGGCCTTTTTCTCTATGGCAGAGACTTCAATCACCACACTTTGGCCTTGGAAGGTTCGTGAGTTGGCTGAAAAGGAGTCCGAAAATGGCGTTTTCAGACTACTTCGAAGTGACGTTACGCGGTTCCTTACAACAATACTTATTGGCACAACGGTGGTCAATATTGGGGCAACTGCACTGGTCACTGAAGCAGCGACTGCTATGTTTGGTGAAGCTGGTGTCAGTGCTGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGCATAGCTGTTCATAATGCCACTGAGGTTGCTCGTTTTGTGGTCAGGCCAGTGGCATGGCTTTCCCTGGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGTGAGCCATATGTGACAGAAGATGAGCTAAAATTGATGCTAAGAGGTGCAGAATTAAGTGGGGCAATAGAAGAGGAAGAACAGGATATGATTGAAAATGTTCTAGAGATAAAAGATACACATGTCAGAGAGGTTATGACCCCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGGGTACCTGTTTTTGAGCAACGCGTTGATAATATAATGGGTATAGCATATGCAATGGACCTGCTGGATTATGTTCAAAAGGGGGAGTTGCTGGAAAGTACTACAGTTGGAGATATGGCTCACAAGCCTGCTTATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTCAGAATCAGGAAGGTTCACATGGCGGTTGTTCTTAATGAGTATGGTGGAACTGTGGGGATTGTAACTCTTGAAGATGTTGTCGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCAAAGGAGGAGATCCAGAAAAAAACTGGTTACATAGTAATGCGAGCTGAGGGTATTTTTGATGTGGATGCAAACACATCTATTGATCAGCTCTCAGAGGATTTGAACATCAAGATGCCGGAGGGTCATCAATATGAGACAGTATCAGGCTTTGTGTGTGAGGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTAGTTCTTGAAAGGGAAGATGAAGATGATAACAATGAGTCCAGTGCTGACCAGCAGGATCACAAGCAAAAGAATCAAACTTTCAAACTCGAGAATGGAAAACACGCAGCTGCTTTGTCTTTGGTGCAGATACTAGCTGGAAATGCCAGAAAGGTGAGCGCAGTTCGGTTTGAAAGAATAAATAATAATGATGAGATGTTGGAGACTAAAGTCACTCGCATGGTCCCCAAAATCATGAAGAGAAAATGGAACAACGCTGAAAACTTGGAGGATGATACAGAATATGATGGAGATACATTTGCAAAGAAACCACATGATGACATTTCTAGTGAATATTTAGTTGATCAGGAAAGTTCTAGTACAAAATAA 2034 0.4213 MALESWVLSYQSFNPSSRLFYTAHENRRKSIPINFLGRNSRYSFPFVSSCVGPSTFSTLQVSSFGADAKLLDRTRLRCLDGSSDGLSETNAVSGTNLKFVHELLKRGIILAATVCGVLVFGCPRVFAVEDVVDAGYGVIGQSILLLRNTWPKVLQVLRIFKEQGLVLALLLGISAFFSMAETSITTLWPWKVRELAEKESENGVFRLLRSDVTRFLTTILIGTTVVNIGATALVTEAATAMFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASSSLVDFHHLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGIFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDNNESSADQQDHKQKNQTFKLENGKHAAALSLVQILAGNARKVSAVRFERINNNDEMLETKVTRMVPKIMKRKWNNAENLEDDTEYDGDTFAKKPHDDISSEYLVDQESSSTK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00337 677 SUPERFAMILY CBS-domain pair 344 483 IPR046342 -
Vimu1g00337 677 ProSiteProfiles CNNM transmembrane domain profile. 156 342 IPR002550 -
Vimu1g00337 677 Pfam Cyclin M transmembrane N-terminal domain 166 342 IPR002550 -
Vimu1g00337 677 CDD CBS_pair_CorC_HlyC_assoc 356 477 IPR044751 -
Vimu1g00337 677 MobiDBLite consensus disorder prediction 645 667 - -
Vimu1g00337 677 Pfam Transporter associated domain 502 615 IPR005170 -
Vimu1g00337 677 MobiDBLite consensus disorder prediction 645 677 - -
Vimu1g00337 677 FunFam Magnesium/cobalt efflux protein CorC 338 488 - -
Vimu1g00337 677 SUPERFAMILY FAD-binding/transporter-associated domain-like 499 558 IPR036318 GO:0050660
Vimu1g00337 677 ProSiteProfiles CBS domain profile. 428 486 IPR000644 -
Vimu1g00337 677 ProSiteProfiles CBS domain profile. 361 422 IPR000644 -
Vimu1g00337 677 Gene3D - 498 591 IPR016169 -
Vimu1g00337 677 PANTHER HEMOLYSIN-RELATED 158 638 - -
Vimu1g00337 677 Pfam CBS domain 425 480 IPR000644 -
Vimu1g00337 677 Pfam CBS domain 357 415 IPR000644 -
Vimu1g00337 677 Gene3D - 336 491 IPR046342 -
Vimu1g00337 677 SMART CorC_HlyC_2 501 616 IPR005170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00337 Vimu-Chr1 1984454 1991789 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00337 - - gmx:100778907 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00337 1 1984454 1991789 Vimu1g00337 1 1984454 1991789 ECH