Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00308 ATGTCGTTGGGAATCCTTCGATCTCGCGCGGTTTCATCCGTATCGAAGCGATTCCTCTGCACCAATACAGCTTCTGCTCCTCTTCCTCCTCCTCCTTCTCCCAATGCAGCTTCCGCTCCTCTTCCTCCTCCTCCTTCTCCCAGGCGCTGGAATTTCCTCAAATACGCCATTGTCGGCGCACTTACCGGAGCCACCGGCTTTGCCGGTTACGCTTCTTACGCTTACAGCTTGGAGGAAATAGAAGAGAAAACGAAGTCCTTCCGTGAGTCTGCCAAACACACTGCAGCTGATGGAGGCACTGCGCTCGATAATCATATTGCGGGTTTAATACCTAACCTCAATTTTGTTGATGAAATGGCCTTTTGGGTTGTTGGTTATTGCTATATTATACTGCCTACTAAAGCAGTGGAGTTTTATTTGGATTCGAGAAGGCTAATTGAAGAACTAGTTCAGAGTTATACTGAACCATACACGGACAAGCTACTTCCTGATTTGCTTCCTCAGGAGCAACATGTGTTTACTCTTGTTCTTGATCTGAATGAAACATTGATTCACTACATTTGGACGCGAGATACAGGTTGGCAGACTTTCAAAAGACCTGGAGTTGATGCCTTCTTGGAACATTTAGCTCAGTTCTATGAAATAGTAGTGTACACAGACGAACAGAATATGTTTGTTGACCCTGTTATAGAAAGGCTGGATACCAAGCATTGCATTAGATATAGGCTGTCAAGGCCAGCTACTAAGTATCAGGATGGGAAACACTTCAGAGATCTTTCTAAACTAAACAGAAATCCAGCAAAAGTCCTTTATTTGAGCGGCCATGCTCTGGAAAGTTGCCTGCAGCCTGAGAACTGTGTCCCCATTAAGGCATGGCAGCAGCAAGATATAGATGACACGGCCCTTTTGGATTTTATACCATTTCTTGAGTTTGTTGCCCGTAGTAGTCCATCTGATATAAGACCAGTGCTAGCCTCTTACGAAGGATGTGATATTCCCAGTGAATTTATCAGGCGTTCCAAAGAGCATCAGAGGGGTTCTTTTGCATCAAATTTGAGGATATTTCTATCTTTCCTATATGTTAGTGTGGCGCAAGGAACGGTCTTGAGCATGGATGCTGAAGAGAATGCAAGAACAGAAGCATCGTGGTCGCTTCTGGAAATAAGATGGCCAGTTTCATTGCAAGTCGATAACAATTGTTCTTTGTTGGGCTAG 1215 0.4453 MSLGILRSRAVSSVSKRFLCTNTASAPLPPPPSPNAASAPLPPPPSPRRWNFLKYAIVGALTGATGFAGYASYAYSLEEIEEKTKSFRESAKHTAADGGTALDNHIAGLIPNLNFVDEMAFWVVGYCYIILPTKAVEFYLDSRRLIEELVQSYTEPYTDKLLPDLLPQEQHVFTLVLDLNETLIHYIWTRDTGWQTFKRPGVDAFLEHLAQFYEIVVYTDEQNMFVDPVIERLDTKHCIRYRLSRPATKYQDGKHFRDLSKLNRNPAKVLYLSGHALESCLQPENCVPIKAWQQQDIDDTALLDFIPFLEFVARSSPSDIRPVLASYEGCDIPSEFIRRSKEHQRGSFASNLRIFLSFLYVSVAQGTVLSMDAEENARTEASWSLLEIRWPVSLQVDNNCSLLG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00308 404 FunFam Mitochondrial import inner membrane translocase subunit TIM50 159 342 - -
Vimu1g00308 404 CDD HAD_FCP1-like 173 289 - -
Vimu1g00308 404 SUPERFAMILY HAD-like 160 325 IPR036412 -
Vimu1g00308 404 ProSiteProfiles FCP1 homology domain profile. 168 312 IPR004274 -
Vimu1g00308 404 SMART forpap2 171 300 IPR004274 -
Vimu1g00308 404 Gene3D - 158 342 IPR023214 -
Vimu1g00308 404 Pfam NLI interacting factor-like phosphatase 174 321 IPR004274 -
Vimu1g00308 404 PANTHER DULLARD PROTEIN PHOSPHATASE 100 337 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00308 K17496 - gmx:100803155 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00308 1 1845592 1850905 Vimu1g00308 1 1845592 1850905 ECH