Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00305 AGGGTTAAGAACAGAGGGGGAAAAAATGGAGGGAAAGAGGAGGAGGTTACAAATGGAGTCACAAGCAGAGAGTGTGATTCTTCTCACGAAAATCAAAGAATTCACTCGAGTTTTGCTCACAGATCTTACCAATGGATGCTCACCAGTCATTCTCATCGATCGCTTCAGAAGCTACTGTGCCGTTCCCAACGCCAACTGCTTTTGTGCCTCCGATTTGCCGTACGGAAAGGAAGCTCTCACACTCCGCACGAAATCCCGCGCGCACAGACTAGGTCACTCTCCTTTTCATTTCACGACTTTGAAGTATTGTGTATATTTCCTTTCGGCTATTCTTTAACTGTATACGCAATTACGAATACGAATTACGAGACTCTGTGTTTTGGATGGGTTCCGCTTTCAGTTGTCATGTTGAGGGTGATGCTGATTGTACAGAAACTTTTGCAAGAGAACAAGCATAGCTCCAAGAGAGACATTTATTACACGTATCCTTCTTTATTTTTGGATCAGTCAGTGGTGGACCAAGCAATTAATGATATATGTATTCTTATGCAGTGCAGTCGCCATAACCTTAATGTGGTAGTTTTCTGCTCTATCGTTACTTTTTTTGTCATTTTCCTTTGGTTTCCGCAGGGAATGGGTACAGTGCTAAGACTTATGGATCGAGTTTGTTTATGCTGTAGGTTAACTATGGGCTGGATAAGGTTCTCTGAAGGAGAGAGGAAATTTGACTGCATTAGTTCTCCCAACAGTGTCCACCCCGTTCCCGTTCATGTTGAGGAAGTTAAAGATATCATTAGTGTTGCACAATACATATTAGTTGTGGAGAAAGAATCAGTTTTCCAAAGACTGGCAAACGACCAATTCTGCAATGCAAATCACTGTATTGTCATCACTGGAAGAGGCTACCCAGATATTCCTACTAGAAGGTTTTTGCGGCTTCTGGTAGAGAATTTGCGCCTGCCTGTTTATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATTCTAACCACTTACAGATTTGGTTCGATGCAAATGGCTTATGACACGAAACATCTTCGTGTCCCAGAGATACGCTGGCTTGGAGCTTTTCCTTCAGATTCCGAGAGATATTTTGTTCCAAAGCAGTGTATCCTTCCTTTGACTGCCGAGGTGCTCTCAATATTTCTTCTAGACAAAAGAAAAGTTGAAGCCATGTTACTTAGATGCTACCTTCAAAGGGAGGTACCACAATGGAGGTTTGAGCTAAAGCTGATGCTCCAAAAGGGAGTAAAGTTTGAGATTGAAGCCTTATCTGCGCACGCACTTTCATTCTTGTCAGATTCTTACATCCCATCTAAAATTGAACGTAAATTGATTATGTAG 1365 0.4212 RVKNRGGKNGGKEEEVTNGVTSRECDSSHENQRIHSSFAHRSYQWMLTSHSHRSLQKLLCRSQRQLLLCLRFAVRKGSSHTPHEIPRAQTRSLSFSFHDFEVLCIFPFGYSLTVYAITNTNYETLCFGWVPLSVVMLRVMLIVQKLLQENKHSSKRDIYYTYPSLFLDQSVVDQAINDICILMQCSRHNLNVVVFCSIVTFFVIFLWFPQGMGTVLRLMDRVCLCCRLTMGWIRFSEGERKFDCISSPNSVHPVPVHVEEVKDIISVAQYILVVEKESVFQRLANDQFCNANHCIVITGRGYPDIPTRRFLRLLVENLRLPVYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIRWLGAFPSDSERYFVPKQCILPLTAEVLSIFLLDKRKVEAMLLRCYLQREVPQWRFELKLMLQKGVKFEIEALSAHALSFLSDSYIPSKIERKLIM 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00305 454 Pfam Type IIB DNA topoisomerase 135 192 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Vimu1g00305 454 Gene3D - 228 453 - -
Vimu1g00305 454 MobiDBLite consensus disorder prediction 1 31 - -
Vimu1g00305 454 CDD TOPRIM_TopoIIB_SPO 270 438 IPR034136 -
Vimu1g00305 454 FunFam DNA topoisomerase 6 subunit A 226 454 - -
Vimu1g00305 454 PRINTS DNA topoisomerase VI subunit A family signature 155 166 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vimu1g00305 454 PRINTS DNA topoisomerase VI subunit A family signature 295 316 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vimu1g00305 454 PRINTS DNA topoisomerase VI subunit A family signature 271 288 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vimu1g00305 454 PRINTS DNA topoisomerase VI subunit A family signature 327 343 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vimu1g00305 454 Gene3D - 130 194 IPR036388 -
Vimu1g00305 454 PRINTS SPO11 homologue signature 332 351 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vimu1g00305 454 PRINTS SPO11 homologue signature 69 90 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vimu1g00305 454 PRINTS SPO11 homologue signature 285 300 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vimu1g00305 454 PRINTS SPO11 homologue signature 367 391 IPR013048 GO:0003677|GO:0003918|GO:0042138
Vimu1g00305 454 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 134 451 IPR002815 GO:0003677|GO:0003918|GO:0005694
Vimu1g00305 454 SUPERFAMILY DNA topoisomerase IV, alpha subunit 135 450 IPR036078 GO:0003677|GO:0005694
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00305 Vimu-Chr1 1835918 1839463 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00305 K10878 - gmx:100813920 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00305 1 1835918 1839463 Vimu1g00305 1 1835918 1839463 ECH