Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00303 ATGGCGCCGGTGGCAGCGAGAAGCGCAGGCGCCGTGGGTGTTGGTGTCGCAATCTTCATCTCAGTCGCTCTCACAACCTATTTAATCTGTGACCGCCGCTCCAAGAAGAAGAGCATGTCAAGGAAGAATGGGGTCGTGGAGGCCATCGGTAACACCCCTCTCATTCGGATCAACAGCCTCTCCGACGCCACTGGCTGTCAAATTCTCGGCAAGTGCGAGTTCTTGAATCCCGGAGGCAGTGTCAAGGACCGTGTTGCTCTTCAAATAATTCAAGAGGCTCTGGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGGAGTACTGCCATTAGCATTGCTACTGTTGCTCCTGCCTATGGGTGCAAGACCCACGTGGTTATACCAGATGATGCTGCCATTGAGAAGTCTCAAATACTTGAAGCCCTTGGGGCAACTGTTGAAAGAGTGCGACCAGTGTCCATTACTCACAAAGACCATTTTGTAAATATCGCAAGAAGACGGGCATCTGAAGCAAATGAGTATGCGCTGAAACAGAGAAATTTACATCTTAATGATAAGGACACTGCGAAAATAAATGGTTGTGAATCTGATGGATACCATTATAGCTCTCTGTTTCCTAGTGACTGCCAAGGTGGGTTTTTTGCAGATCAGTTTGAAAACTTAGCAAACTTCAGGGCCCATTACCAGGGTACAGGGCCTGAGATTTGGGAACAGACCAATGGAAAGTTAGACGCATTTGTTGCAGCAGCAGGCACTGGTGGCACTGTGGCTGGTGTTTCTACGTTTCTTCAGGAAAAGAATCCAGAAATCAAATGCTTCCTCGTAGATCCTCCAGGTTCTGGTTTGTATAATAAGGTAACTCGGGGAGTGATGTACACCAAAGAGGAGGCTGAAGGAAAAAGACTTAAGAATCCATTTGACACTATAACAGAAGGAATTGGAATTAACAGGATAACAAAGAATTTTGCGATGGCAAAACTTAATGGCGCCTTTAGAGGCACCGATAGGGAGGCTGTTGAAATGGCTAGGTTTCTTTTGAAGAACGATGGGCTCTTCCTCGGGAGTTCATCTGCAATGAACTGTGTCGGAGCAGTTAGAGTAGCACAGGCAATTGGCCCTGGCCATACCATTGTGACCATACTCTGCGATAGTGGAATGAGACATTTGAGCAAGTTCTGTAATGTTGAATACTTGTCTGAGCTGGGTTTGACACCGAAAGCAGCTGGATTGGAGTTCTTGGGCATCGAATGA 1266 0.4731 MAPVAARSAGAVGVGVAIFISVALTTYLICDRRSKKKSMSRKNGVVEAIGNTPLIRINSLSDATGCQILGKCEFLNPGGSVKDRVALQIIQEALESGQLRPGGIVTEGSAGSTAISIATVAPAYGCKTHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFVNIARRRASEANEYALKQRNLHLNDKDTAKINGCESDGYHYSSLFPSDCQGGFFADQFENLANFRAHYQGTGPEIWEQTNGKLDAFVAAAGTGGTVAGVSTFLQEKNPEIKCFLVDPPGSGLYNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRITKNFAMAKLNGAFRGTDREAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFCNVEYLSELGLTPKAAGLEFLGIE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00303 421 PANTHER CYSTATHIONINE BETA-SYNTHASE 43 399 - -
Vimu1g00303 421 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 71 89 IPR001216 GO:0006535
Vimu1g00303 421 Pfam Pyridoxal-phosphate dependent enzyme 48 388 IPR001926 -
Vimu1g00303 421 FunFam Cysteine synthase, putative 49 78 - -
Vimu1g00303 421 Gene3D - 79 185 IPR036052 -
Vimu1g00303 421 Gene3D - 215 229 IPR036052 -
Vimu1g00303 421 FunFam Cysteine synthase 230 394 - -
Vimu1g00303 421 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 38 402 IPR036052 -
Vimu1g00303 421 CDD CBS_like 50 395 - -
Vimu1g00303 421 Gene3D - 230 394 IPR036052 -
Vimu1g00303 421 Gene3D - 49 78 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00303 Vimu-Chr1 1828778 1831047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00303 40 395 Miscellaneous Gene Families AT3G04940 30.168 2.05e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00303 K01738 - gmx:100799081 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00303 1 1828778 1831047 Vimu1g00303 1 1828778 1831047 ECH