LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g00292	ATGGCGCAGGTGCTGCTGTACATGACTTTACCTGTCCCCGCAAAACCTCGCAAAGCTGCATCATCATCTTCTTCTTCCAAGCCATTGAAGTTTTCCCGTAGAAGCTGCTGCACTAACATATCCATTCATACTGTCAAAGGCAGAGGCAAACGTTTGGTCAAACCCCAGAAGCTGAATTTAGAGGTTTCTCCTCATAGAGCTGTTTCAGCGGTGAGATTGATGCGAATTGAGCTCGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTCGGTTTTCGCACTCGGGAATTGAGTCATCATGACCTTAGATTGGTCACAGATATTGTTGGTGGCACAATTCGCTGGAGAAGATATCTTGATTATCTGATCAATTCACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGGTTGTCAAATTGGACATGCCGCCTTATGCTGTTGTAGATGAGAACGTGGAGCTTGCTAAAGTTGCTCTTAGACCTGGGGCTGGAAACATGGAGAACAGTACTCTTCCTTTTCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCCCGTGCACTGGCAACTCTACACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTCGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAGCCCAGTTTCAGCTTAAGGCAAGTGAATATTTCTTCCATTTATTTAGCAAATCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTGGCACAGCTTAATGCATTGAAGGTCCCACACAAGCTTTCATTGTATTTAGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTGTTATTCATGCTGGTCTGCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTAGTAGTTTCCGTTGTGGATCCTCAACCTGGTGAAACTATCGTCGACGGTTGTGCTGCTCCTGGTGGGAAGACCCTATACATGGCCTCTCATTTAAGTGGTCAAGGTAAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTTATTACCGCCATTCATGCTGATCTTCGTACATTGACTGATAATGAACAACTTAAGAGTGACAAAGTTTTGTTGGATGCTCCATGTTCTGGACTTGGTGTTCTATCCAAGAGAGCGGACTTGCGATGGAACAGGAAGCTTGAGGATATGGAAGAACTGAAGAAGTTACAAGATGAGCTCCTAGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTGTTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAACGAAGACAGGGTCGCTGCATTTCTTGTAAGACATCCGCGGAATGGATTAAACAGGGACAACATGCATATCATTCTCTTTGGAGATCAGTGCTCTGGTTTCCCCTCTAATTTTTCAAGTGCTAATTTACTATTGTTTGAATTCCAGGATTTCCACATTGATCCTGTAGACAGATATGTTCCTCCTGATTTTGTGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGTTCCTTTGCTGCCCGTTTGAGGCTGCTTATGAGTCACGACTGTTCTGGTATATCTCTTCATGTCTTCATACTTTGGAATCAAGCATTTAACCTGCAGTGGGATACTGCACTTCCAGAACAGGCATTCTGA	1788	0.434	MAQVLLYMTLPVPAKPRKAASSSSSSKPLKFSRRSCCTNISIHTVKGRGKRLVKPQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELSHHDLRLVTDIVGGTIRWRRYLDYLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMENSTLPFPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRQVNISSIYLANRASGFSRDDLVAQLNALKVPHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVVSVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDNEQLKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELLDAASKLVKPGGVLVYSTCSIDPEENEDRVAAFLVRHPRNGLNRDNMHIILFGDQCSGFPSNFSSANLLLFEFQDFHIDPVDRYVPPDFVTSSGFFFSNPVKHSLDGSFAARLRLLMSHDCSGISLHVFILWNQAFNLQWDTALPEQAF	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g00292	595	Gene3D	Vaccinia Virus protein VP39	216	560	IPR029063	-
	Vimu1g00292	595	PRINTS	RNA (C5-cytosine) methyltransferase signature	339	349	IPR023267	GO:0001510
	Vimu1g00292	595	PRINTS	RNA (C5-cytosine) methyltransferase signature	544	561	IPR023267	GO:0001510
	Vimu1g00292	595	PRINTS	RNA (C5-cytosine) methyltransferase signature	310	324	IPR023267	GO:0001510
	Vimu1g00292	595	PRINTS	RNA (C5-cytosine) methyltransferase signature	407	419	IPR023267	GO:0001510
	Vimu1g00292	595	PRINTS	RNA (C5-cytosine) methyltransferase signature	457	473	IPR023267	GO:0001510
	Vimu1g00292	595	Gene3D	-	83	200	IPR035926	-
	Vimu1g00292	595	SUPERFAMILY	NusB-like	102	225	IPR035926	-
	Vimu1g00292	595	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	251	549	IPR001678	GO:0008168
	Vimu1g00292	595	PANTHER	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	212	557	IPR023267	GO:0001510
	Vimu1g00292	595	Pfam	16S rRNA methyltransferase RsmB/F	329	493	IPR001678	GO:0008168
	Vimu1g00292	595	Pfam	NusB family	98	197	IPR006027	GO:0003723\|GO:0006355
	Vimu1g00292	595	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	213	560	IPR029063	-
	Vimu1g00292	595	FunFam	Ribosomal RNA small subunit methyltransferase B	322	503	-	-
	Vimu1g00292	595	PRINTS	Viridiplantae FMU-related RCMT signature	71	94	IPR023268	-
	Vimu1g00292	595	PRINTS	Viridiplantae FMU-related RCMT signature	95	111	IPR023268	-
	Vimu1g00292	595	PRINTS	Viridiplantae FMU-related RCMT signature	520	532	IPR023268	-
	Vimu1g00292	595	CDD	AdoMet_MTases	337	463	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g00292	Vimu-Chr1	1739611	1747062	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g00292	K03500		-	gmx:100779327	850.121

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu1g00292	1	1739611	1747062	Vimu1g00292	1	1739611	1747062	ECH