Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00289 ATGAGAGAAGAAGGTAGCAGAGAAGATGAAGAAGCCCGTGTTAGTTTGTTTGAGACAAAGGAAGCAAGATTCCGAGGATTGTACAAGGTATTCGCAGGAACAATATTTGGGTGTATTTGTTTGATCTGGGTTTACAGAGTGGTGAACATGGACAGAATCGAAAGAGGACGATGGTGTTGGATGAGTGTTATGGTGTCAGAGTTTTGTTTTGGATTCTACTGGATCATCACACAGTCTGTTCGATGGAGAATACTCTACCACACACCTTTCAAACACACCCTCTTAAACAGATATGACGAGCAGAATTTACCAGCAGTGGACATTTTTGTATGCACTGCCGATCCAAAACTGGAGCCTCCATGCATGGTCATGAACACAGTGTTATCAGCAATGGCATACAATTATCCTGCAAATAAATTGAACGTATATCTCTCTGACGATGGAGGCTCTGAGCTAACATTCTATGCTCTCCTAAAAGCTTCCATTTTCTCTAAACATTGGTTACCCTTTTGTAGAAGATTCAATGTTGAGCCTAGGTCGCCTGAAGTTTTCTTTGCTCAACTCCAAAATTCAAGCACTAACACTGAGTATCAGAAAGCATATTTACATATCAAGAAATTGTATAAGGAAATGAAAAGTGAGATTGAATCAGCCGTAGCAAAGGGAGAGCTTCCAGAGAATGTGAAGAATGAGCACAGGGGATTCTCAGAATGGAACCCAAAAACGACAAAGCAGAATCACCAGTCTATTGTGCAGATTATAGTGGATGGAAGAGATAGAAATAGTGTAGATGAAGATGGATTTGAACTTCCAACAGTGGTATACATGGCACGAGAGAAACGACCCAACCATCCTCATCACTTCAAAGCTGGTGCTGTTAATGCACTGATAAGAGTATCATCCGAAATAAGCAATGCTCCTTTCATCCTCAACTTGGACTGTGACATGTACTCCAATAATGCAGATACAATTCAAGAAATACTATGTTTTTTCCTCGACGAAACAAAAGGACAAGATATAGCATATGTACAATTTCCCCAAAGTTTCAGTAACATCACCAAAAATGACCAGTATGGAAATTCTTATCTTGTAAGCGCTAAGTATGAGTTAGCTGGCATATGCGGATACGGAGCAGCCTTGTTCTGTGGAACAGGATGCTTACATAGAAGAGAAAGTCTTTCGGGATCTCACTTGAAAGATTACAAAGTAAATTTGGAGAAGAAGCCTAAAAGAAACAATAACAGAACAATTGATGAACTGAATGAAGCATCGAAGGCTCTTGCCACTTGTACATATGAAGAGGGCACCCAATGGGGGAAGGAGATGGGATTAGTATATGGTATTCCTGTAGAAGACGTTGCAACTGGCCTTGTGATCTCATGTAGGGGTTGGAAATCTATTTATTACAACCCAGAAAGAAAGGCATTTGTGGGAATAGCTCCAACAACCTTGGATGTAGCATGTCTTCAGCATATGAGGTGGTCAGAAGGCCTGTTCCAAGTTTTCTTCTCCAAGTATTGCCCTTTCATTTATGGGCATGGGAAGATACACTTGGGTGTTCAAATGGGATATTGCAATTACCTCTTGTGGGCTCCTATGTCCCTGCCCACTCTTTGTTATGCCATTGTTCTTCCCATTTCCTTGTTTCATGGCATTCCATTGTTCCCAAAGCTTTCAAGCATGTGGGTCATTCCATTTGTGTATGCATTTCTTGCTACCTATGGCTATAGCTTGTGTGAGTATTTGACTTGTGGATCCACGACAAAGGCATGGTGGAATTTGCAGAGAATAAAGTTCATCCACAGAGTCACCTCTTATCTCTTTGGTTTCATCGATACAGTGACAAAGCAACTAGGATTGTCTCAGACAAACTTTGTGATCACAGATAAAGTGGTAACCGAGGATGTTCAAACTAGATACGAGCAAGGAATCATTGAGTTTGGAGGCTCCTCAATCATGTTGACCATCTTAGGAACAGTGGTTTTGCTGAACCTTTTTGGTCTGGTCGGAGGAATCGTGAGAATTTTAATGGAATTGAAATTGAGCTGGAGCCAATTGATGATGCAGATTACAGTGAGTTTCTTAGTGGTAATGATCAATTTACCTGTATATGAAGCACTTTTCATTCGTACTGATAAAGGCTGCATATCATCCTCGATTATGCTGAAGTCCATTGTTGTGGCTTCTTTATCATGTTACCTTGGAGCTTTCATTTGCTAG 2220 0.4072 MREEGSREDEEARVSLFETKEARFRGLYKVFAGTIFGCICLIWVYRVVNMDRIERGRWCWMSVMVSEFCFGFYWIITQSVRWRILYHTPFKHTLLNRYDEQNLPAVDIFVCTADPKLEPPCMVMNTVLSAMAYNYPANKLNVYLSDDGGSELTFYALLKASIFSKHWLPFCRRFNVEPRSPEVFFAQLQNSSTNTEYQKAYLHIKKLYKEMKSEIESAVAKGELPENVKNEHRGFSEWNPKTTKQNHQSIVQIIVDGRDRNSVDEDGFELPTVVYMAREKRPNHPHHFKAGAVNALIRVSSEISNAPFILNLDCDMYSNNADTIQEILCFFLDETKGQDIAYVQFPQSFSNITKNDQYGNSYLVSAKYELAGICGYGAALFCGTGCLHRRESLSGSHLKDYKVNLEKKPKRNNNRTIDELNEASKALATCTYEEGTQWGKEMGLVYGIPVEDVATGLVISCRGWKSIYYNPERKAFVGIAPTTLDVACLQHMRWSEGLFQVFFSKYCPFIYGHGKIHLGVQMGYCNYLLWAPMSLPTLCYAIVLPISLFHGIPLFPKLSSMWVIPFVYAFLATYGYSLCEYLTCGSTTKAWWNLQRIKFIHRVTSYLFGFIDTVTKQLGLSQTNFVITDKVVTEDVQTRYEQGIIEFGGSSIMLTILGTVVLLNLFGLVGGIVRILMELKLSWSQLMMQITVSFLVVMINLPVYEALFIRTDKGCISSSIMLKSIVVASLSCYLGAFIC 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00289 739 SUPERFAMILY Nucleotide-diphospho-sugar transferases 121 503 IPR029044 -
Vimu1g00289 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 240 399 IPR029044 -
Vimu1g00289 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 95 200 IPR029044 -
Vimu1g00289 739 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 726 - -
Vimu1g00289 739 Pfam Cellulose synthase 106 400 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu1g00289 739 Pfam Cellulose synthase 415 730 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu1g00289 739 FunFam Cellulose synthase isolog 95 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00289 Vimu-Chr1 1699576 1704176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00289 16 738 Glycosyltransferase AT1G55850 47.730 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00289 - - gmx:100779861 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00289 1 1699576 1704176 Vimu1g00289 1 1699576 1704176 ECH