Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00264 ATGTGGGGGGGGTTGCGGTTTATGTGTGTTTTCCGGTTCAAGATGTGGTGGATGACGCAGAGAATGGGCACTTGCGGACAAGAAGTTCCCTTTGAGACGCAGTTCTTGCTTGTTGAAGCACAAAGTGGCTCTGATATTGATGCAGGAGAAGACCAATCTGCTGCTACCTATGCAGTTTTCTTACCCCTTCTGGAAGGAGATTTCAGAGCAGTTCTTCAGGGGAATGATCAAAACGAGATTGAGATCTGTGTGGAAAGATATTGGGGTGGTGTTAAGCCTGGGGTTACCGGCATGGAGCACTACGACTCAAAGATGGCCTTCCCTGTCTCATCTCCTGGAGTTGAGTCAAATCAACCAGATGAAGCTTTGGCAACCATTGCCGTCAATGGGCTTGGTCTTGTGAATCCCGAGAAAGTTTTTCACTTTTATGATGAACTTCACTCATATTTGGCATCTGCTGGTGTTGATGGTGTCAAGAGCCTGCATCCAATGGCTGAATACCATGCAGCAGCACGAGCTGTAGGAGGATGTCCAATTTATGTCAGGTGA 549 0.4754 MWGGLRFMCVFRFKMWWMTQRMGTCGQEVPFETQFLLVEAQSGSDIDAGEDQSAATYAVFLPLLEGDFRAVLQGNDQNEIEICVERYWGGVKPGVTGMEHYDSKMAFPVSSPGVESNQPDEALATIAVNGLGLVNPEKVFHFYDELHSYLASAGVDGVKSLHPMAEYHAAARAVGGCPIYVR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00264 182 Pfam Raffinose synthase or seed imbibition protein Sip1 5 85 IPR008811 -
Vimu1g00264 182 Pfam Raffinose synthase or seed imbibition protein Sip1 87 159 IPR008811 -
Vimu1g00264 182 PANTHER - 4 85 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00264 Vimu-Chr1 1534019 1536506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00264 5 85 Glycoside Hydrolase AT1G55740 74.074 4.35e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00264 K06617 - gmx:100785582 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00264 1 1534019 1536506 Vimu1g00264 1 1534019 1536506 ECH