Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00259 ATGGAGAATGAGGCACATAGCATGTCATCTGATATAGAAATAGGTGTGAATGAGAAGATGGTTGAGGCACTTGAGTCAAGTGACAACATCCCACTGTTGCTCACCAATTCTAGCTCTCTCAAAAGGACAGGGACGGTGTGGACAGCAGTGGCACATATAGTGACTGGGGTGATAGGATCGGGAGTGCTGTCTCTGCCGTGGAGCACTGCACAGCTTGGTTGGTTAGCAGGACCACTCTCAGTCATTCTCATAGCTTCCATCACTCTGTTCTCTTCTTTTCTTCTATGCAACACTTATCGCCATCCCCATCCTGAACATGGTCCAAATAGGAGTGCCTCCTACCTTGATGTTGTCCATCTGCATTTAGGAATAAGTAATGGGCGGCTCAGTGGCCTTCTTGTGAATATAAGTTTGTATGGTTTTGCAATTGCCTTCGTCATTACAACAGCTATCAGCTTAAGAACAATCCAACATTCATTTTGTTACCACAACAAAGGGAGTGAAGCATCATGTGAATTTGCAGATGCATATTACATGCTGCTTTTTGGCGTTATCCAAATTATTCTCTCACAGATACCCAACTTCCATAACATCAAATGGTTGTCGGTTGTTGCTGCAATTATGTCCTTTACTTATTCTTTCATAGGAATGGGGCTTTCCATTGCACAAATCATAGAGAAAGGACATGCTGAGGGTAGCATTGGAGGAATCAGTTCCTCCAGTGGAACTGAAAAGTTATGGCTGATTTCTCAAGCACTTGGTGACATATCATTCTCATTTCCGTTCTCAACAATTATTATGGAAATACAGGATACTTTGAAATCACCTCCACCTGAAAACCAAACCATGAAGAAGGCCTCAGTAATTGCGGTCACTGTCACAACATTTATCTACCTCAGTTGTGGAGGTGCTGGATATGCTGCCTTTGGTGATAATACACCAGGAAACCTTTTAACAGGGTTTGAATCCTCTTACTGGCTTGTGAGCTTTGCTAACGTCTGTATAGTGGTTCACCTAGTTGGTTCATATCAGGTGTATTGCCAGCCACTTTTTGCCACTGTTGAGAGTTGGTTCCGTTTTAATTTCCCGGATAGTGAATTTATGAATCACACATATATCTTGAAACTCCCGTTGCTACCAGCCTTTGAACTTAATTTTCTCAGCCTGTCTTTCAGAACTGCTTATGTTGCATCAACAGTTGTGATTGCAATGGTCTTTCCCTACTTCAACCAGATTTTGGGGGTTCTGGGTAGCATTATTTTTTGGCCATTGACCATATATTTTCCTGTGGAAATATATTTGAATCAATCCTCTACTGTAGCATGGACGACTAAGTGGGTCCTGCTTCGGACTTTCAGCATTTTTGGCTTCGTTTTTGGATTGTTCACTCTCACTGGAAGTATTAAAGGAATAGTATCTCAAAAAATTGACTGA 1434 0.4191 MENEAHSMSSDIEIGVNEKMVEALESSDNIPLLLTNSSSLKRTGTVWTAVAHIVTGVIGSGVLSLPWSTAQLGWLAGPLSVILIASITLFSSFLLCNTYRHPHPEHGPNRSASYLDVVHLHLGISNGRLSGLLVNISLYGFAIAFVITTAISLRTIQHSFCYHNKGSEASCEFADAYYMLLFGVIQIILSQIPNFHNIKWLSVVAAIMSFTYSFIGMGLSIAQIIEKGHAEGSIGGISSSSGTEKLWLISQALGDISFSFPFSTIIMEIQDTLKSPPPENQTMKKASVIAVTVTTFIYLSCGGAGYAAFGDNTPGNLLTGFESSYWLVSFANVCIVVHLVGSYQVYCQPLFATVESWFRFNFPDSEFMNHTYILKLPLLPAFELNFLSLSFRTAYVASTVVIAMVFPYFNQILGVLGSIIFWPLTIYFPVEIYLNQSSTVAWTTKWVLLRTFSIFGFVFGLFTLTGSIKGIVSQKID 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00259 477 Pfam Transmembrane amino acid transporter protein 42 472 IPR013057 -
Vimu1g00259 477 PANTHER OS05G0424000 PROTEIN-RELATED 44 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00259 Vimu-Chr1 1504508 1507410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00259 34 454 Organic Solute Cotransporters AT1G77380 49.176 3.03e-150 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00259 K24917 - gmx:100788056 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00259 1 1504508 1507410 Vimu1g00259 1 1504508 1507410 ECH