Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00228 ATGCACAGACTCTCCACCACTGCTCGTTCTTCATCCGTCTCCGCCTTGTTGCGCTATGGCGGCGCACTTCGAAGGGACGTCGTTGCTCCCATTTCCTCTTCTCACATAGCTAAGGTGAGTGAGAAGGACACCCAAGCTAGATGGTTTTCTATTCTGGGCACGGACAAGTCCAGCACAATTGAATCTGAAAATCATCCAAACTTGAGAAGAGATTTTTTCTCGGGTAGACGATGTGAATCAACTGCTGCAGAATCTTCTGCTTCTAGTTCCACACCAGCCGAGAGATATGAATACCAAGCTGAGGTTAGTCGGCTCATGGACCTCATTGTTAACAGTTTATACAGTAACAAAGAAGTGTTTCTTAGGGAACTTATTAGCAATGCAAGTGATGCTTTGGATAAGCTGCGATTTCTGAGTGTAACAGAGCCTGGACTGTTGAAGGATGCAGTTGATTTTGATATCCGAATTCAAACTGATAAGGATAATGGGATCATATCTATTACTGATACAGGCATTGGTATGACTAGGCAAGAGCTAGTTGATTGCCTTGGAACTATTGCTCAAAGTGGAACTGCAAAGTTTTTGAAGGCTCTGAAGGATAGCAAGGATGCTGGTGGTGACAACAACTTAATTGGTCAGTTCGGTGTGGGATTTTATTCTGCTTTCCTGGTTGCTGATCGGGTGGTTGTCTCGACAAAGAGTCCAAAATCTGATAAGCAGTACGTTTGGGAAGGAGAGGCAAATGCTAGCTCATATACCATAACTGAGGAAACAGATCCGGAGAAGCTGCTTCCAAGAGGAACTCGTCTTACTCTTTATCTCAAGAGGGATGACAAAGGTTTTGCTCATCCAGAGCGTATTGAGAAGCTTGTGAAAAACTATTCACAATTTGTCTCGTTCCCAATATACACTTGGCAGGAAAAGGGATTCACCAAAGAAGTGGAAGTTGAGGAGGATACAGAGGAAGCTAAAAAGGATGCAGAGGAGGCTAAAAAGGATGATCAAGATGGGAAGACTGAGAAAAAGAAGAAAACTAAAACTGTTGTTGAGAAGTACTGGGATTGGGAGCTGACAAATGAGACCCAACCAATCTGGCTCCGCAATCCTAAAGAAGTCACTAAAGAGGAGTACAATGAATTCTACAAGAAAACTTTTAATGAATACTTGGAGCCATTAGCATCCTCACACTTTACCACAGAGGGTGAAGTAGAATTTAGATCTATACTTTTCGTTCCAGCCTTTGCTCCCTCAGGGAAGGATGACATAATCAATCCCAAGACCAAGAATATAAGACTTTATGTGAAGAGAGTGTTCATTTCAGACGACTTTGATGGAGAACTGTTCCCTCGATACTTGAGCTTTGTCAAAGGTGTTGTTGACTCAAATGACCTCCCACTTAATGTGTCACGTGAAATTCTTCAAGAGAGCCGCATAGTGCGGATTATGAGGAAACGTTTAGTTCGGAAAGCTTTTGACATGATTCTGGGAATATCCATGAGTGAGAACAGAGAGGATTATGAAAAATTCTGGGAGAACTTTGGCAAACACTTGAAATTGGGTTGCATTGAAGACCGTGAGAATCACAAACGTATTGCTCCATTGCTTCGCTTTTTCTCATCCCAAAGTGAGGAAGAATTGATTGGCTTGGATGAATACGTTGAGAACATGAAACCTGATCAAAAGGATATTTATTATATTGCTTCTGACAGTGTGACTAGTGCGAAGAACACCCCTTTCTTGGAGAAACTTGCGGAGAAGGATCTTGAAGTTCTGTTTTTGGTGGATCCAATAGATGAGGTTGCCATTCAAAACCTTAAATCATACAAGGAAAAGAATTTTGTTGACATTAGCAAAGAAGACTTGGATCTAGGTGATAAGAATGAGGAAAAGGAAAAAGAAATGAAGCAGGAATTTGGCCAAACATGTGACTGGATCAAGAAACGACTGGGAGAAAAAGTTGCAAGTGTACAAATTTCAAATCGACTTAGCTCTTCACCTTGTGTTCTGGTGTCTGGGAAATTTGGTTGGTCTGCAAACATGGAAAGGCTGATGAAGGCACAGAGTATGGGTGATGCATCCAGCTTGGAATTCATGAGGAGCAGAAGGGTGTTTGAGATCAACCCTGACCATGCCATTATCAGGAATTTGGATGCTGCATACAAAACGAATCCCAATGATGAAGATGCCCTCAGAGCTATCGATCTTTTGTATGATGCAGCTTTGGTTTCCAGTGGTTTTACGCCTGATAATCCAGCACAACTTGGAGGGAAGATATACGAGATGATGGGTATGGCTCTCACAGGTAAATGGTCGACACCTGATCAGTTCCAGTCGACTGTAGCGCAGCCCCATATCCCAGAAACTGTAGAAGCTGAGGTTGTCGAACCTACTGAGGCTGGCGGTCAGAAGTGA 2412 0.4274 MHRLSTTARSSSVSALLRYGGALRRDVVAPISSSHIAKVSEKDTQARWFSILGTDKSSTIESENHPNLRRDFFSGRRCESTAAESSASSSTPAERYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRFLSVTEPGLLKDAVDFDIRIQTDKDNGIISITDTGIGMTRQELVDCLGTIAQSGTAKFLKALKDSKDAGGDNNLIGQFGVGFYSAFLVADRVVVSTKSPKSDKQYVWEGEANASSYTITEETDPEKLLPRGTRLTLYLKRDDKGFAHPERIEKLVKNYSQFVSFPIYTWQEKGFTKEVEVEEDTEEAKKDAEEAKKDDQDGKTEKKKKTKTVVEKYWDWELTNETQPIWLRNPKEVTKEEYNEFYKKTFNEYLEPLASSHFTTEGEVEFRSILFVPAFAPSGKDDIINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENREDYEKFWENFGKHLKLGCIEDRENHKRIAPLLRFFSSQSEEELIGLDEYVENMKPDQKDIYYIASDSVTSAKNTPFLEKLAEKDLEVLFLVDPIDEVAIQNLKSYKEKNFVDISKEDLDLGDKNEEKEKEMKQEFGQTCDWIKKRLGEKVASVQISNRLSSSPCVLVSGKFGWSANMERLMKAQSMGDASSLEFMRSRRVFEINPDHAIIRNLDAAYKTNPNDEDALRAIDLLYDAALVSSGFTPDNPAQLGGKIYEMMGMALTGKWSTPDQFQSTVAQPHIPETVEAEVVEPTEAGGQK 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00228 803 FunFam Heat shock protein 90 alpha 619 767 - -
Vimu1g00228 803 CDD HATPase_Hsp90-like 103 298 IPR020575 -
Vimu1g00228 803 PIRSF HSP90_HTPG 57 798 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vimu1g00228 803 MobiDBLite consensus disorder prediction 315 341 - -
Vimu1g00228 803 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 85 772 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vimu1g00228 803 SUPERFAMILY Ribosomal protein S5 domain 2-like 361 619 IPR020568 -
Vimu1g00228 803 Gene3D - 532 618 - -
Vimu1g00228 803 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 94 308 IPR036890 -
Vimu1g00228 803 FunFam heat shock protein 90-5, chloroplastic 359 531 - -
Vimu1g00228 803 ProSitePatterns Heat shock hsp90 proteins family signature. 114 123 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vimu1g00228 803 Pfam Hsp90 protein 281 770 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vimu1g00228 803 PRINTS 90kDa heat shock protein signature 94 114 IPR020575 -
Vimu1g00228 803 PRINTS 90kDa heat shock protein signature 266 283 IPR020575 -
Vimu1g00228 803 PRINTS 90kDa heat shock protein signature 182 199 IPR020575 -
Vimu1g00228 803 PRINTS 90kDa heat shock protein signature 284 302 IPR020575 -
Vimu1g00228 803 PRINTS 90kDa heat shock protein signature 164 181 IPR020575 -
Vimu1g00228 803 PRINTS 90kDa heat shock protein signature 211 233 IPR020575 -
Vimu1g00228 803 PRINTS 90kDa heat shock protein signature 115 137 IPR020575 -
Vimu1g00228 803 Gene3D - 80 323 IPR036890 -
Vimu1g00228 803 Gene3D - 359 531 - -
Vimu1g00228 803 Gene3D - 619 766 IPR037196 -
Vimu1g00228 803 FunFam heat shock protein 90-5, chloroplastic 81 323 - -
Vimu1g00228 803 Coils Coil 313 333 - -
Vimu1g00228 803 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 116 276 IPR003594 -
Vimu1g00228 803 Hamap Chaperone protein HtpG [htpG]. 91 763 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vimu1g00228 803 FunFam Heat shock protein 90 532 618 - -
Vimu1g00228 803 SUPERFAMILY HSP90 C-terminal domain 642 762 IPR037196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00228 Vimu-Chr1 1269136 1274235 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00228 K09487 - gmx:100794913 1370.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00228 1 1269136 1274235 Vimu1g00228 1 1269136 1274235 ECH