Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00188 ATGGAAGCTGAAAGGGTTGAATTGCTTAGTGTTGTTGAGGATCATTACGGAGGAGTTGTTGTAAGCGTGGAGAATCAGGAGCCTGTGGATTCTGAGCTCTTCTCTTCCGTATTGGAAGCTTCAATTTACAATTGGAGGCAACAGGGAAGGAAAGGGGTCTGGCTCAAGTTGCCCATACTGCATTCAAATCTTGTTCATACTGCTGTCAAGGCTGGATTTAGGTATCACCATGCTGAACCAGATTATTTGATGCTTGTGCGATGGATTCCAGAAACTCCTGATACCTTTCCTGCAAATGCTTCACATCGCGTGGGTGTTGCCGTTTTTGTCGTTAACGACAAGAAAGAGATGCTTGTGGTTCAGGAAAAAAGTGGCATATTCGGAGGCACTGCTCTATGGAAGATGCCTACAGGAGTTGTTAATGAAGGTGAGGATATTTGTGATGGTGCAATTAGAGAAGTAAAAGAAGAGACTGGGATAGAGACAAAGTTTGTTGAACTTTTAGCTTTCAGGCAAAGCCACAACTCATTCTTCGAGAAATCAGATTTGATGTTTGTGTGCATGTTGGAACCTCTATCCTCTGACATTCAGATTCAGGCCTCAGAAATTGAGGCAGCGCAGTGGATGCCAGTTGAAGATTATGCTGCCCAGCCTTTTGTGCAAGAACATGAACAATTTGACTTTGTTGCAAAAATATGTTCTTCAAAGTTGGATGGCAACTACACAGGTTTTTCTAACGTGCGTACTTGTACTTCATCTGGCAAAAAAACCTATCTTTATCTTAGCAACAGGGATGCCAGCCTTTTGTTAGCTTCCAAACAAGACCAAGCTTGA 834 0.4281 MEAERVELLSVVEDHYGGVVVSVENQEPVDSELFSSVLEASIYNWRQQGRKGVWLKLPILHSNLVHTAVKAGFRYHHAEPDYLMLVRWIPETPDTFPANASHRVGVAVFVVNDKKEMLVVQEKSGIFGGTALWKMPTGVVNEGEDICDGAIREVKEETGIETKFVELLAFRQSHNSFFEKSDLMFVCMLEPLSSDIQIQASEIEAAQWMPVEDYAAQPFVQEHEQFDFVAKICSSKLDGNYTGFSNVRTCTSSGKKTYLYLSNRDASLLLASKQDQA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00188 277 SUPERFAMILY Nudix 69 226 IPR015797 -
Vimu1g00188 277 FunFam nudix hydrolase 2 6 94 - -
Vimu1g00188 277 FunFam Nudix hydrolase 8 103 241 - -
Vimu1g00188 277 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 61 79 IPR003293 -
Vimu1g00188 277 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 99 117 IPR003293 -
Vimu1g00188 277 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 187 211 IPR003293 -
Vimu1g00188 277 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 83 99 IPR003293 -
Vimu1g00188 277 ProSitePatterns Nudix box signature. 138 159 IPR020084 GO:0016787
Vimu1g00188 277 ProSiteProfiles Nudix hydrolase domain profile. 101 233 IPR000086 -
Vimu1g00188 277 Pfam NUDIX domain 102 226 IPR000086 -
Vimu1g00188 277 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 103 235 - -
Vimu1g00188 277 Pfam Nudix hydrolase domain 9 89 IPR040618 -
Vimu1g00188 277 Gene3D - 6 94 - -
Vimu1g00188 277 PANTHER NUDIX HYDROLASE RELATED 3 265 IPR003293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00188 Vimu-Chr1 1033849 1037146 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00188 K26956 - gmx:100818821 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00188 1 1033849 1037146 Vimu1g00188 1 1033849 1037146 ECH