Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00187 ATGAAGAACCTTCTCTTACTTTTTCCCTTTCTCTTTCTCCTCCTCTCCTCCGCCGTCAATGGCGCTCACAACATCACCCACATCCTCGAGAAACATCCGGGCTTCTCCACCTTCAACCACTACCTCACCGTCACCCACCTCGCCGACGAGATAAACCGCCGACAGACCATCACCGTGCTCGCCATCGACAATGGCGCCATGAACTCCCTCCTCGACAAGCACCTTTCCCTCCCCACCCTCAAAAACGTCCTCTCCCTCCACGTACTCGTCGACTACTTCGGCACCAAGAAGCTCCACCAGATCAACAACAGCACCACTCTCGTCTCCTCCATGTTCCAGGCCACCGGAGCAGCAGCCGGAACCTCCGGCTACGTCAACATCACCAACCTCAAGGGCGGCAAGGTGGGCTTCGCCGCCGAGGACAACGACGGCTCCCTCCACTCCTTCTTCGTCAAGTCCCTCCAAGAATTCCCCTACTACATCTCCGTCCTCCAAATCAGCAACCCCATAAGCTCCGCCGACGCCGAAGCCCCCACCGCCGCACCCTCCGCCATCGACCTCATATCAATTATGTCCAAACAAGGCTGCAAGTCCTTCGCCGACCTTCTTAGAGGCTCCAAAGCGCTTCCGGCTTTCAAAGAAAGCATCGACGGCGGCTTGACGGTTTTCTGCCCCACCGACAGCGCCGTCGACGGGTTTGCCCCCAAGTACAAGAACCTCACCGAATCTCAAAAAGTTTCACTCTTGCTGTTCCACGGCGTTCCCCTTTACGAGTCTCTGCAGATGCTGAAGTCCAGCAACGGCCTCATGAACACTCTCGCCACCGAGGGAGCAAACAAGTACGATTTCACCGTCCAGACTGACGGCGAAGACGTGAGTCTGAAGACGAAGGTGAACACTGTCAGCATAATCGGCACGCTCATAGATCAAGACCCCTTCGTGGCCTACAAGATCAACAAGGTCTTGATGCCCAGAGAGTTGTTCAAGGCCTCCGACGTCGACGACGACGAAGCACCCGCCGAGTCACCAAAGCCATCCAAGAAGAAGGGCAAGAAGGGAGTGCAAGATTCCGCCGCAGATGCTCCCGCCGACGGACCCTCGTCGGATTCCGAAGATCAGAAAGCCGCGGACGAAGACAGCAACAATGTAAGTGGATTGCACGACGGCGTAAGATTGGTGTCGGCGGCGTTGTTCAGTGTGTTGATTGGATTTTTGGTTCTATGA 1224 0.5613 MKNLLLLFPFLFLLLSSAVNGAHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNSLLDKHLSLPTLKNVLSLHVLVDYFGTKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGSLHSFFVKSLQEFPYYISVLQISNPISSADAEAPTAAPSAIDLISIMSKQGCKSFADLLRGSKALPAFKESIDGGLTVFCPTDSAVDGFAPKYKNLTESQKVSLLLFHGVPLYESLQMLKSSNGLMNTLATEGANKYDFTVQTDGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDVDDDEAPAESPKPSKKKGKKGVQDSAADAPADGPSSDSEDQKAADEDSNNVSGLHDGVRLVSAALFSVLIGFLVL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00187 407 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 390 IPR033254 -
Vimu1g00187 407 SMART fasc_3 221 325 IPR000782 -
Vimu1g00187 407 ProSiteProfiles FAS1/BIgH3 domain profile. 22 189 IPR000782 -
Vimu1g00187 407 Pfam Fasciclin domain 196 324 IPR000782 -
Vimu1g00187 407 Pfam Fasciclin domain 34 107 IPR000782 -
Vimu1g00187 407 MobiDBLite consensus disorder prediction 332 355 - -
Vimu1g00187 407 SUPERFAMILY FAS1 domain 28 141 IPR036378 -
Vimu1g00187 407 FunFam Fasciclin-like arabinogalactan protein 10 176 325 - -
Vimu1g00187 407 Gene3D FAS1 domain 22 148 IPR036378 -
Vimu1g00187 407 Gene3D FAS1 domain 187 324 IPR036378 -
Vimu1g00187 407 ProSiteProfiles FAS1/BIgH3 domain profile. 183 322 IPR000782 -
Vimu1g00187 407 SUPERFAMILY FAS1 domain 181 325 IPR036378 -
Vimu1g00187 407 MobiDBLite consensus disorder prediction 332 385 - -
Vimu1g00187 407 FunFam Fasciclin-like arabinogalactan protein 2 21 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00187 Vimu-Chr1 1030603 1031826 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00187 - - gmx:100805178 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00187 1 1030603 1031826 Vimu1g00187 1 1030603 1031826 ECH