Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04936 ATGCCTCGCCCCAAGTGGTTTTTCCTCTCTCTCGCGCTCTCTCTCTCTCTCCTCACTCTCTCTCGCTCCGTCGCCGCACGCCAATTCGTGCTCGTGCTCTCTCAGGAAGACTTCAAGGACGACCCAGGCGCCGAACCCGATTCCTCCGCCGAATGGGACGAGCTCGGCGATGGAGACTCCCACAAATCCGAGGAGGACCTCGACCCTGGTTCATGGCGCCCCATCTTCGAGCCCCCCTCCGGAGACCCCCAGCCTCTATCGGAATCCGACGCCGCCTACTACTCCGCCGTCGGCAAGCTCATGTCTGTTAACCCCGCCCTCATTGAGGACGGCGCAGCAGAGATCGCTGCCGCAGCCGAGACTGGCCATCCCGCCTCGCAATCGGTTCTAGGGTTTTTGTGGGAAATGGGGCTTTTGAGAGAGCGAAGCAAAGGGAAGGCGTTTTTATATCACCACTTCGCCGCCGAGGGCGGCAACATGCAGTCCAAGATGGCTTTGGCTTATAAGTACACGCGTCAAGACATGTTTGACAAAGCTGTTAATCTGTATGCTGAATTAGCTGAAGTGGCAGTGAATAATTTTCTGATTTCGAAAGATTCTCCCGTGATTGAACCGGTTAGGCTCCACAATGGGGCTGAGGAGAACAAGGAGGCTCTGAGAAAATCAAAGGGGGAAGAGGATGAGGACTTTCAGATACTGGAGTATCAAGCCCAGAAGGGGAATGCTGCTGCCATGTACAAAGTTGGCCTCTTTTACTACTTTGGCCTTAGGGGATTGAGGCGTGATCATTCCAAGGCGCTGTCGTGGTTTTTGAAGGCTGTGGAGAAGGGAGAGCCCCGATCTATGGAGCTTCTTGGAGAGATCTATGCTAGGGGAGCAGGTGTTGAGAGAAACTATACCAAAGCGTTTGAGTGGCTCACGCTTGCTTCCAGGCACCAACTGTATTCTGCTTATAATGGGATGGGATATTTGTATGTCAAAGGCTATGGAGTTGACCAGAAGAATTACACTAAAGCAAAGGAGTATTTTGAAAAGGCTGCAGAGAATGACGAGGTTGGGGGGCACTATAACTTGGGTGTCATGTATCTCAAGGGGATTGGAGTTAAGAGGGATGTTAAGCTGGCTTGCAAGTTCTTTGTGGTGGCTGCTAACAATGGTCAACCAAAAGCGTTCTACCAGTTGGCTAAGATTTTCCACAATGGTGTTGGGTTCAAGAAGAACATTCACTTGGCTACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCCTGGAGTTCTTTGTCTAGATGGGCTCTAGAGTCATACTTGAAAGGTGATCTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGGTATGAGGTCGCACAAAGTAATGCTGCTTGGATTCTTGATAAATATGGTGAACGTAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGAGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGGGTACGGCCAGGGATTATGAGCGAGCTGCTGAAGCTTACATGCATGCCAAATCACAATCTAACGCACAAGCCATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATTTGACCTTCATCTAGCCAAGCGGTACTATGATGAAGCTCTGGATCATGATCGTGCCGCAAAGTTGCCAGTAACACTGGCTCTTTCAAGCTTGTGGATTCGTAAGAACTATGCTGATAGTTTCATGGTCCACGTGATTGATTCATTGCCAGAACTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTCATGGAGGAGGGAAATGCTACCATTTTGACCCTCTTTGCATGCCTCATAACTGTGCTATATCTCCGCGAGAGGCAACGAAGGCAAGCTGGTGTTGCAGCTGGAGAGGTGGCTCAACCAAATCTCCCCAACGAGCTTGGTGTACCTGCACTCTAG 2016 0.5 MPRPKWFFLSLALSLSLLTLSRSVAARQFVLVLSQEDFKDDPGAEPDSSAEWDELGDGDSHKSEEDLDPGSWRPIFEPPSGDPQPLSESDAAYYSAVGKLMSVNPALIEDGAAEIAAAAETGHPASQSVLGFLWEMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYKYTRQDMFDKAVNLYAELAEVAVNNFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHQLYSAYNGMGYLYVKGYGVDQKNYTKAKEYFEKAAENDEVGGHYNLGVMYLKGIGVKRDVKLACKFFVVAANNGQPKAFYQLAKIFHNGVGFKKNIHLATALYKLVAERGPWSSLSRWALESYLKGDLGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDEALDHDRAAKLPVTLALSSLWIRKNYADSFMVHVIDSLPELYPKLEAWVENVLMEEGNATILTLFACLITVLYLRERQRRQAGVAAGEVAQPNLPNELGVPAL 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04936 671 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 10 655 IPR044623 GO:0030433
Vimu11g04936 671 SUPERFAMILY HCP-like 117 190 - -
Vimu11g04936 671 SUPERFAMILY HCP-like 223 349 - -
Vimu11g04936 671 MobiDBLite consensus disorder prediction 37 88 - -
Vimu11g04936 671 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 207 318 - -
Vimu11g04936 671 Gene3D Tetratricopeptide repeat domain 207 316 IPR011990 GO:0005515
Vimu11g04936 671 MobiDBLite consensus disorder prediction 54 71 - -
Vimu11g04936 671 Pfam Sel1 repeat 316 350 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 437 455 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 506 528 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 355 386 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 125 159 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 392 422 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 242 277 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 540 573 IPR006597 -
Vimu11g04936 671 Pfam Sel1 repeat 280 312 IPR006597 -
Vimu11g04936 671 SUPERFAMILY HCP-like 435 574 - -
Vimu11g04936 671 SMART sel1 352 387 IPR006597 -
Vimu11g04936 671 SMART sel1 124 159 IPR006597 -
Vimu11g04936 671 SMART sel1 504 539 IPR006597 -
Vimu11g04936 671 SMART sel1 315 351 IPR006597 -
Vimu11g04936 671 SMART sel1 388 423 IPR006597 -
Vimu11g04936 671 SMART sel1 242 278 IPR006597 -
Vimu11g04936 671 SMART sel1 540 575 IPR006597 -
Vimu11g04936 671 SMART sel1 279 314 IPR006597 -
Vimu11g04936 671 SUPERFAMILY HCP-like 333 463 - -
Vimu11g04936 671 Gene3D Tetratricopeptide repeat domain 429 584 IPR011990 GO:0005515
Vimu11g04936 671 Gene3D Tetratricopeptide repeat domain 108 198 IPR011990 GO:0005515
Vimu11g04936 671 Gene3D Tetratricopeptide repeat domain 317 428 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04936 Vimu-Chr11 68826901 68831142 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04936 K14026 - gmx:100787823 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04936 11 68826901 68831142 Vimu11g04936 11 68826901 68831142 ECH