Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04935 ATGGTTGTGCCACTGCGAAATGTTTCTAGATATCTGAATCGGAAAGTAGATGTCATTGGCGTTGTTATGGAAACCACATTTACCAAGAAAACAAAGGGCACGGCTGCCATTTACTTCATTGGTAGTAGATTGATGAACTTTATCGTGAAAGTGTATTCTGAGCCAGTTGTTTTCACCATGGCTGCCAATGTTTTTGCCACAAATAATAGAAGTCTTCCCATTGTGGCTGCTGTTGGGGATATAATTAAACTTTGTCTTGTAGTGGTAGGAACCTTCAACGGAGAAGTAAATGTTACTTATAGGAAAAGTATTTCATCATTTGCTTTATACAAAGGCAAAGATGGTGATATTTTAGACCCCTATCAAGTTTCTCCTAATTTTTTCCCCAGAGATGCAGACAAGATAATAATAGCTAAGCTGAGAAAATGGCTTGTCAATTTCCAGCTTTGTGAAGATTCCAGTAAGTTTCCTATGTTCAGAGAACTCAAAGAAGATATTTATGTTAATTTGGCATGCAAGATACTTCATCTTAGTGAGCCTGAGAAAGATGAATGGTTGATGTATGTCTGGGATGGGACTGATACCCCACCAAATGCTATATGTTCAAACCTACAAGACGAACATAGGATTCCACTTCCTTTACAAGTGGAACTTTTGCCCTTGTCAAGAGATATTTTATGTACTTTGCCAACGGTTGGTTCTATCATTAGAATAGTTTTTGACGAAGGTATGCAAAATAGTCATTTCCACCTTCTAACCGTTGGTAAATGGGTCAAGATCACTTATTTGCGTCTTGAGTTGCATTGTGGACTGTGGTATGGTGTGTTTACCCTTCAATCAAAGGTTCGGTATATATCAAGTGAAGATCAACTCATTGTTGAACGCCAAAGAGTGGCTGATGAGAGACTCTCTATGCCATATTTGAGCTTCCCTCAGCCTTCACCAACTACAGCAGTCAATCATTGTGAGCATGTGTCACATGTTACTTTAATGAGTGTCCTCACTCATCCGGAGGTGACGGCCATATTTAAATGTGTTGTTCGGGTCGTAGCAGCAATGGCATGTGAAGATGAAAATCCCAGCTCTTATAAATATAAACTGCGACTGACACTAGAGGATTCAACTGCTAGAATCCATGCTCATGTAATTGGAGAGGATTTGGATCTTTTTGGCACCAATTACACAAATGATGTTACACTTTATTATTCAGTCACTCTTTTTGATGGTCATCCTGATGTTGATAAGTGGACTAAGAAGCTGGATATATTACTTGAAGGATCTGAAGTTTGTAATAATGGACGCAAAAGAAATCCACCTTGGGTTTGTGTTTGTCTTAAGTCATACTATCTATCCGAAGATGATATCTGGGGCACTAGAAATTTCAGAGTATTTGACACCAAAATAATGGAAGATTCATCATAG 1422 0.3854 MVVPLRNVSRYLNRKVDVIGVVMETTFTKKTKGTAAIYFIGSRLMNFIVKVYSEPVVFTMAANVFATNNRSLPIVAAVGDIIKLCLVVVGTFNGEVNVTYRKSISSFALYKGKDGDILDPYQVSPNFFPRDADKIIIAKLRKWLVNFQLCEDSSKFPMFRELKEDIYVNLACKILHLSEPEKDEWLMYVWDGTDTPPNAICSNLQDEHRIPLPLQVELLPLSRDILCTLPTVGSIIRIVFDEGMQNSHFHLLTVGKWVKITYLRLELHCGLWYGVFTLQSKVRYISSEDQLIVERQRVADERLSMPYLSFPQPSPTTAVNHCEHVSHVTLMSVLTHPEVTAIFKCVVRVVAAMACEDENPSSYKYKLRLTLEDSTARIHAHVIGEDLDLFGTNYTNDVTLYYSVTLFDGHPDVDKWTKKLDILLEGSEVCNNGRKRNPPWVCVCLKSYYLSEDDIWGTRNFRVFDTKIMEDSS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04935 473 Gene3D - 3 152 IPR012340 -
Vimu11g04935 473 PANTHER PROTECTION OF TELOMERES 1 4 468 IPR028389 GO:0000723|GO:0043047
Vimu11g04935 473 Pfam Telomeric single stranded DNA binding POT1/CDC13 9 144 IPR011564 GO:0000723|GO:0000781|GO:0003677
Vimu11g04935 473 SMART Telo_bind_a_2 2 145 IPR011564 GO:0000723|GO:0000781|GO:0003677
Vimu11g04935 473 Gene3D - 159 278 IPR012340 -
Vimu11g04935 473 SUPERFAMILY Nucleic acid-binding proteins 7 147 IPR012340 -
Vimu11g04935 473 SUPERFAMILY Nucleic acid-binding proteins 159 273 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04935 Vimu-Chr11 68819731 68825662 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04935 - - vra:106756188 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04935 11 68819731 68825662 Vimu11g04935 11 68819731 68825662 ECH