Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04917 ATGGAACAATACCATTGGACCTTCTTTGAAGATGAAACTAACCATGGTTGGCTCTTCCACCACTTGATTAATGTCACTCATAGAATTTCTTCTCACAGAGTTGAAGGTAGAGATCATTTGAAAAGGGTCATATTCATGGCTGATACATTCGATGAAGAGTGTGACTTTCTCTTCAAAGCTGTTCTGATTGGAGACTCTGGAGTTGGGAAATCAAATCTGCTCTCAAGGTTTGCAAAAGATGAATTCAGGTTGGATTCCAAACCCACAATAGGAGTTGAATTTGCTTACCGGAACATCAAGGTCGGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCTGGCCAAGAAAGGCAGAAATATTATGCAGCAGAGTTGAATAATGAGCATGGGTTTAGAGCAATCACGAGTTCGTACTACCGAGGGGCTTCGGGGGCAGTGCTGGTGTATGACATAACGATGAGATCAAGCTATGAGAATGTGAGAAAGTGGCTATTGGAGCTGAGGGAGTTCGGAGGGGAAGAGATGGTGGTTGTTCTTGTGGGAAACAAATGCGATCTGGATCAATCGAGAGAGGTTGAGAAAGAAGAAGGAAAAGGGTATGCTGAAACAGAAGGCTTGTGCTTCATGGAAACCTCTGCTTTGAAGAATCTCAACGTTGAGGAAGTGTTCTTGCAAATGATCACAAGGATTTATCACATGACCAGGCAGAAGAATTTGGCAGCTAAAATGGACGAGAAACCGATTAATCTTCTCAACGGGAAGGAGATTCATGTTGCTGATGAAGTCACTGCAACCAGACAACCTAGTTCTTGCTGTTCCAGATGA 828 0.4312 MEQYHWTFFEDETNHGWLFHHLINVTHRISSHRVEGRDHLKRVIFMADTFDEECDFLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERQKYYAAELNNEHGFRAITSSYYRGASGAVLVYDITMRSSYENVRKWLLELREFGGEEMVVVLVGNKCDLDQSREVEKEEGKGYAETEGLCFMETSALKNLNVEEVFLQMITRIYHMTRQKNLAAKMDEKPINLLNGKEIHVADEVTATRQPSSCCSR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04917 275 ProSiteProfiles small GTPase Rab1 family profile. 51 273 - -
Vimu11g04917 275 SMART rab_sub_5 58 234 - -
Vimu11g04917 275 SMART rho_sub_3 60 234 IPR001806 GO:0003924|GO:0005525
Vimu11g04917 275 SMART ran_sub_2 63 266 - -
Vimu11g04917 275 NCBIfam small GTP-binding protein domain 59 224 IPR005225 GO:0005525
Vimu11g04917 275 ProSiteProfiles small GTPase Rho family profile. 51 232 - -
Vimu11g04917 275 Gene3D - 50 273 IPR027417 -
Vimu11g04917 275 PANTHER DRAB11-RELATED 52 243 - -
Vimu11g04917 275 SMART ras_sub_4 55 234 - -
Vimu11g04917 275 ProSiteProfiles small GTPase Ras family profile. 52 252 IPR001806 GO:0003924|GO:0005525
Vimu11g04917 275 FunFam ras-related protein RABA5a 50 273 - -
Vimu11g04917 275 PRINTS Transforming protein P21 ras signature 81 97 - -
Vimu11g04917 275 PRINTS Transforming protein P21 ras signature 99 121 - -
Vimu11g04917 275 PRINTS Transforming protein P21 ras signature 174 187 - -
Vimu11g04917 275 PRINTS Transforming protein P21 ras signature 209 231 - -
Vimu11g04917 275 PRINTS Transforming protein P21 ras signature 58 79 - -
Vimu11g04917 275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 248 IPR027417 -
Vimu11g04917 275 CDD Rab11_like 55 232 - -
Vimu11g04917 275 Pfam Ras family 59 232 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04917 Vimu-Chr11 68750119 68752316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04917 K07976 - gmx:100781746 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04917 11 68750119 68752316 Vimu11g04917 11 68750119 68752316 ECH