Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04899 ATGCCCACGACGGAGCGCGGCCGCGGGATTCTGATCTCCGGCGACGCCAAGTCCAACTCCATCGTCTACACCAACGCCAGATCGGTGGTCATCGTGAGCCTCGAGAATCCCCTTAACGTCTCTGTCTACGGGGAACATGCCTACCCGGCCACCGTCGCGCGTTTCTCCCCCAACGGCGAGTGGGTCGCCTCCGCCGACGCCTCCGGTACTGTCAGGATCTGGGGCACGCGAAACGACTTCGTTTTGAAGAAGGAGTTCAGAGTCCTCTCCGGGCGCATCGACGACCTTCAGTGGTCCCCCGACGGCCTCCGAATCGTTGCCTGCGGCGAAGGCAAAGGGAAGTCCTTCGTCCGCGCTTTCATGTGGGATTCCGGGACTAATGTTGGAGAATTTGACGGTCACTCGCGCCGGGTTTTGAGTTGTGCATATAAACCCACGAGACCATTTCGTGTTGTTACCTGTGGAGAGGATTTTCTGGTTAACTTTTATGAGGGACCTCCCTTTAGATTTAAGCTATCTCACAGGGATCATTCAAATTTTGTTAATTGTGTAAGATATTCTCCAGATGGCAGTAAATTTATAAGCGTAAGTTCTGACAAAAGTGGTTTCATATTCGATGGAAAAAGTGCTGAGAAGATTGGTGAGTTGTCTTCTGAAGGTGGGCATACTGGAAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAACAGGTGCTGACTGTGTCTGCTGACAAGTCTGCAAAAGTATGGGACATATCAGAAGACAATAACGGAAAGGTGAAAAAAACTTTGACTTGTCCTGGCACTGGTGGAGTTGAAGATATGCTAGTGGGGTGCCTATGGTTGAATGATTATCTTGTCACTGTTTCTCTGGGTGGGATAATATCTATATTTTTAGCAAGCGATCTTGATAAAGCCCCGACAGCATTTTCTGGACATATGAAAAACGTTTCCTCCTTATCTATTCTTAGAAGTAACCCTAAAGTGCTCTTGTCTAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGAAAACTACAAAGGAAGGAAGGTTCTCAAATCAAATGCTTAGTGGCCGTAGAAGAAGAGATTGTTACTTCTGGATTTGATAATAAGATAAGGCGAGTTTCTTTTCATGGGGATCAGTGTGGAGATGCCGAGGCCATTGATATAGGAAGTCAACCAAAGGACTTGAGTGTTGCACTTCTTTCACCTGAACTTGCTCTAGTTTCAATTGATTCTGGAGTTGTCATGCTGCGTGGTACAAAAATCGTGTCAACCATTGATCTGGGGTTTGTTGTGACTGCATCTGCTGTCTCACCTGATGGAAGTGAAGCCATTATCGGTGGACAGGATGGTAAATTACACATATATTCTATTTCTGGTGATACTCTTGTAGAAGAGGCTGTCCTTGAGAAACATAGGGGTGCTATTAGTGTGATACGTTATTCTCCAGACGTTTCAATGTTTGCATCAGGGGATGTCAATCGAGAAGCTATAGTGTGGGACCGTGCCTCCCATGAGGTGAAGCTTAAGAACATGTTGTATCATACTGCTAGGATAAATTGTCTTGCATGGTCACCTGATAGCCGTAGGATTGCCACAGGGTCGCTTGATATGTGTGTCATCATATATGAAATTGATCAGCCTGCATCTAGTAGAATTACCATAAAGGGTGCTCATTTAGGTGGGGTTTATGGGTTAACATTCACTGACGAATATAGTTTGGTTAGCTCAGGTGAGGATGCTTTTATCCGTGTTTGGAAGATAACCCCTCCTTGA 1800 0.4583 MPTTERGRGILISGDAKSNSIVYTNARSVVIVSLENPLNVSVYGEHAYPATVARFSPNGEWVASADASGTVRIWGTRNDFVLKKEFRVLSGRIDDLQWSPDGLRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLVNFYEGPPFRFKLSHRDHSNFVNCVRYSPDGSKFISVSSDKSGFIFDGKSAEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDISEDNNGKVKKTLTCPGTGGVEDMLVGCLWLNDYLVTVSLGGIISIFLASDLDKAPTAFSGHMKNVSSLSILRSNPKVLLSSSYDGLIVKWIQGIGYSGKLQRKEGSQIKCLVAVEEEIVTSGFDNKIRRVSFHGDQCGDAEAIDIGSQPKDLSVALLSPELALVSIDSGVVMLRGTKIVSTIDLGFVVTASAVSPDGSEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAISVIRYSPDVSMFASGDVNREAIVWDRASHEVKLKNMLYHTARINCLAWSPDSRRIATGSLDMCVIIYEIDQPASSRITIKGAHLGGVYGLTFTDEYSLVSSGEDAFIRVWKITPP 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04899 599 Pfam WD domain, G-beta repeat 220 251 IPR001680 GO:0005515
Vimu11g04899 599 Pfam WD domain, G-beta repeat 523 551 IPR001680 GO:0005515
Vimu11g04899 599 Pfam WD domain, G-beta repeat 175 201 IPR001680 GO:0005515
Vimu11g04899 599 Pfam WD domain, G-beta repeat 52 74 IPR001680 GO:0005515
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 520 561 IPR001680 GO:0005515
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 599 - -
Vimu11g04899 599 SUPERFAMILY WD40 repeat-like 310 472 IPR036322 GO:0005515
Vimu11g04899 599 SMART WD40_4 470 509 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 556 595 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 209 251 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 167 206 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 79 123 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 36 75 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 124 164 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 303 343 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 427 465 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 257 299 IPR001680 GO:0005515
Vimu11g04899 599 SMART WD40_4 514 552 IPR001680 GO:0005515
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 599 IPR001680 GO:0005515
Vimu11g04899 599 CDD WD40 46 339 - -
Vimu11g04899 599 Gene3D - 330 596 IPR015943 GO:0005515
Vimu11g04899 599 ProSitePatterns Trp-Asp (WD) repeats signature. 238 252 IPR019775 -
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515
Vimu11g04899 599 FunFam Actin-interacting protein 1 328 596 - -
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 509 - -
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 253 - -
Vimu11g04899 599 Gene3D - 2 327 IPR015943 GO:0005515
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 509 IPR001680 GO:0005515
Vimu11g04899 599 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 596 - -
Vimu11g04899 599 FunFam Actin-interacting protein 1 1 327 - -
Vimu11g04899 599 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 557 IPR011047 -
Vimu11g04899 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 84 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04899 Vimu-Chr11 68643768 68647946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04899 453 597 Miscellaneous Gene Families AT5G08390 29.054 2.65e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04899 K24736 - gmx:100794702 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04899 11 68643768 68647946 Vimu11g04899 11 68643768 68647946 ECH