Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04898 ATGGCAGAGGGTCTCGTTCTCCGTGGCACCATGCGCGCCCACACCGACGTCGTAACGGCGATTGCCACTCCCATTGACAACTCCGACATGATAGTCACGGCTTCGCGCGACAAATCCATCATCTTGTGGCATCTCACCAAGGAGGACAAGACCTACGGTGTACCACGACGCCGTTTAACCGGTCACTCCCACTTTGTTCAGGATGTTGTTCTATCTTCTGACGGTCAGTTTGCGCTTTCCGGCTCCTGGGACGGTGAGCTCCGCCTCTGGGACCTTGCAGCTGGCACCTCCGCGCGCCGTTTCGTTGGACACACCAAGGACGTCCTCTCTGTGGCGTTCTCCATTGACAACCGTCAGATCGTGTCGGCCTCCCGTGACCGCACAATCAAACTGTGGAATACCCTTGGTGAATGCAAGTACACCATTCAAGACAGTGATGCTCATTCTGATTGGGTTAGCTGTGTGCGTTTCAGCCCTAGCACGCTTCAGCCGACTATTGTGTCTGCATCTTGGGACCGCACTGTTAAGGTGTGGAACCTTACGAACTGCAAGCTGAGAAATACCCTTGCTGGACACAGTGGGTATGTGAACACTGTTGCTGTCTCTCCCGATGGTTCTCTGTGTGCCAGTGGTGGGAAAGATGGAGTTATTTTGCTGTGGGATTTGGCTGAGGGTAAGCGTCTTTACTCTCTCGATGCTGGCTCTATTATCCATGCCCTCTGCTTCAGTCCCAACAGGTACTGGCTGTGCGCCGCCACCGAGCAGAGCATCAAGATCTGGGATTTGGAGAGTAAGAGTATTGTTGAGGATTTGAAGGTGGACCTCAAGACTGAGGCTGATGGTACCACCGGTGGCAACACAAACAAAAAGAAGGTTATCTATTGCACGAGTTTGAACTGGAGTGCAGATGGAAGCACTTTGTTTAGTGGTTATACTGATGGCGTGGTCAGAGTTTGGGCAATTGGACGTTATTAG 975 0.5251 MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDSDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADGTTGGNTNKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWAIGRY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Vimu11g04898 324 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Vimu11g04898 324 FunFam Receptor for activated C kinase 1 8 324 - -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Vimu11g04898 324 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 3 321 IPR045223 GO:0043022|GO:0045182
Vimu11g04898 324 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Vimu11g04898 324 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Vimu11g04898 324 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Vimu11g04898 324 CDD WD40 7 320 - -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Vimu11g04898 324 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 324 IPR001680 GO:0005515
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 324 - -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Vimu11g04898 324 Gene3D - 4 324 IPR015943 GO:0005515
Vimu11g04898 324 SUPERFAMILY WD40 repeat-like 5 319 IPR036322 GO:0005515
Vimu11g04898 324 Pfam WD domain, G-beta repeat 293 319 IPR001680 GO:0005515
Vimu11g04898 324 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Vimu11g04898 324 Pfam WD domain, G-beta repeat 235 261 IPR001680 GO:0005515
Vimu11g04898 324 Pfam WD domain, G-beta repeat 139 179 IPR001680 GO:0005515
Vimu11g04898 324 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Vimu11g04898 324 Pfam WD domain, G-beta repeat 187 221 IPR001680 GO:0005515
Vimu11g04898 324 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Vimu11g04898 324 SMART WD40_4 4 44 IPR001680 GO:0005515
Vimu11g04898 324 SMART WD40_4 182 221 IPR001680 GO:0005515
Vimu11g04898 324 SMART WD40_4 94 133 IPR001680 GO:0005515
Vimu11g04898 324 SMART WD40_4 224 261 IPR001680 GO:0005515
Vimu11g04898 324 SMART WD40_4 52 91 IPR001680 GO:0005515
Vimu11g04898 324 SMART WD40_4 276 320 IPR001680 GO:0005515
Vimu11g04898 324 SMART WD40_4 135 179 IPR001680 GO:0005515
Vimu11g04898 324 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Vimu11g04898 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04898 Vimu-Chr11 68638250 68639796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04898 79 268 Miscellaneous Gene Families AT5G08390 29.688 4.54e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04898 K14753 - gmx:100778205 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04898 11 68638250 68639796 Vimu11g04898 11 68638250 68639796 ECH