Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04883 ATGGCATATTCCGGCATATTTCAGGGCTTCATCAGATTCAAAACCATGTCGCGGCTTCGCTGCACTCTTCTCAGACCTTATTTTTCATCCATTTCCACCACTCCTCTTCACCGCACCGCCATTCGCCTCCGCTCCTCCTCCACCGAGCTTAAAGTTGTCAACGTCACGCGCCAGGGGACCGTTACGTTGCCGTTTTGGCACCAGCGCAGCTCCAGCTATGGCCGTTTTGCGTATCAGGACGTGTCCAGTGACGACTCCGATGTGGAATTCGCTTCTCATCCCTCTCATAGCCAACAAGTGGTTCGTCACTTTCCATTCCCTGTCACAAGCACAGGTGATTCAACGCTCGAGAACATTGACGAGTGGAGATGGAAGCTGACCATGCTTATGCGCTCCAAAGACGAACAGGAAGTGGTGTCCAGAGAGAAGAAGGACCGTCGCGACTTCGAGCAGCTTTCCACTTTGGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCAAGAGTTGTCGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAACGTCCACAGAGAGAGGTTGCCTTTTCTAACAAAGTAACCGGAGTTAAAGTTTTAAATTGCAGTTGTTGTCATGATACATTGTCAGCGATGCTGGCAAAGGAGACTGTTGTTTCTGGTAGTGAGAGTGGGAAAATGTGTTTAGGGGGTGGCATTGGTGTAGTTGGCGGCAGTGGGGCTGCGGCTGTTTTCTTTACTGCTGGTAAGGCTATTCTTTGGAATATGAGGAATTGGGATTCCATGTCCGAAAATTGCATCAAACTTATCATTAAATTCCGCCAAGCTGCCCTGCTGTCAAAGAAGCATCAAATCTTGAAAGTGATTTTTATGGCATGTATAGTGGTGCTCATTTCTATGGTCATGTCCAAAATTGATGGAGACATCATCCCTTCTGCACATTATCCCTTGAAGCTTATTAGAAATGCCCTCAACCATGTAGTCTTACCATTTGACGTTCATAAAGAAGTAGATGCCCGTCTCCATGCCCATCTCTCACAAAAGGCTACGGGAAGCAAGTGGAGTTATTTGAATGACTCATTGCATAAATCAAGTGATAGTGTATACTTTCCAGCCAATAAAGGAATGCATGAACAGCCAGAACCCTTGACTCATAATAGTGTTCTCAAGGAGAAAATCCTGCAACGAAGAAGTTTGCAACTGCGTCATCGGCAACAAGATTGGCAGGAATCTCCTGAAGGGCAAAAGATGCTTAAATTTCGTAGAAGTCTTCCTGCTTTCAAAGAGAAGGATGCATTTTTGAGACTTATTTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGACCGAAGCTGCACGCGGGGCTCCCAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAGTTAGGAGAATCTGTTGGATACAAAGTTCGCTTGGAGGGTATGAAAGGGAGAGATACCCGTCTTCTTTTTTGCACCACTGGTGTATTACTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTCGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAAATTCTTCCTCATCGACCTGATTTGAGATTGGTTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGAACTAGACATCGGTTGACACCTTCTAATCAAATTGATGACTATGGTCAAGAAAAAACGTGGAAAATGCAGAAACAAGCTCAAGCTTTCAGAAGAAAAAAGAGCCAAATTGCTTCTGCTGTTGAGGTACAAGATGCTTTAGAAGTTGCGGACTTTAAGGGATATAGCCTACGCACCCAAGATTCATTGTCCTGTTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGTCACATTGTTAAGAATGAAAGGCCAGGAGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAAGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTGGCAACTAACATGGCTGAGACTAGTATTACCATTAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACGTCATATGACGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCAGCCCGGCAGAGGAGAGGAAGGGCCGGCCGTGTTCAGCCTGGCGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAAATGCCAGAGCTTTTGAGAACACCTTTGCAATCCTTGTGTCTTCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAAAGCTCTACAGCCACCAGAGCCTCTATCGGTTGAAAATGCTGTTGAATATTTGAAGATTATCGGGGCCTTAGACGGGAATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTAGGAACCATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTAAGTGTAAGAGATCCATTTGTGACGCCATCTGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCCCAATTTGCTGCTCGTGAATATAGTGATCATCTTGCCCTTGTCCGGGCTTATGAGGGTTGGAAAGATGCTGAGACACAGCAGGCTGGTTATGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAAGGCCATTGAGTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTCAATGACAAGCCTGAAACCTACAATGCATGGAGTCATGAAGTGCATCTCATCCGAGCAGTCATCTGTGCTGGTTTGTTTCCCGGAATATCTTCTGTTATGAACAAAGATAAGTCAATAACACTGAAGACAATGGAGGATGGTCAGAGCTCTGTAAATGGCTGTGTACCCCGAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTAAATTCAGTATTCCTCAGAGATTCAACTGGTGTATCTGATTCGGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTTGATGGTCACCTGAAAATGTTGGGAGGCTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTAAGCTTAAAGATGGAACTGGAAGAATTGATACAGAAAAAGTCTTTGGATATTGACTTTATGATTTGCATGTTTTGCCAGCTTCAGGATCCCACTCAGGAAACACAATCGCATAGTCAGCTCCTTTCAGCTGTAAGATTGTTGGTTTCAGAAGACCATTGTGATGGTAGGTTTGTCTTTGGTCGCCAAGTCCTATCACAGGTAAAGAAGGAAACAAACTCCAAAAGTGGAGTCGAGGCTGAAAATTTTAAAAATCAACTTCAGTCATTTCTTAACAGGGCTGGACATGATTCACCAACTTACAAAACAAAGCAGCTGAAAAACAGCCAATTCCGTTCTACTGTCATATTTAACGGGTTGAATTTTGTTGGTCAGCCTTGCAGCAGCAAAAAATTAGCAGAAAAATCTGCTGCTGCCGAGGCTCTTCTATGGTTGAAAGGGGATAGCCATTCATCTGATGGTATTGACCATGCATCAATTCTTTTGAAGAAGAGCAACAAGAAAAGTACGAAGAAATCGTTTAGTGGCGCTAAGTGGAGTTGA 3984 0.4305 MAYSGIFQGFIRFKTMSRLRCTLLRPYFSSISTTPLHRTAIRLRSSSTELKVVNVTRQGTVTLPFWHQRSSSYGRFAYQDVSSDDSDVEFASHPSHSQQVVRHFPFPVTSTGDSTLENIDEWRWKLTMLMRSKDEQEVVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVAFSNKVTGVKVLNCSCCHDTLSAMLAKETVVSGSESGKMCLGGGIGVVGGSGAAAVFFTAGKAILWNMRNWDSMSENCIKLIIKFRQAALLSKKHQILKVIFMACIVVLISMVMSKIDGDIIPSAHYPLKLIRNALNHVVLPFDVHKEVDARLHAHLSQKATGSKWSYLNDSLHKSSDSVYFPANKGMHEQPEPLTHNSVLKEKILQRRSLQLRHRQQDWQESPEGQKMLKFRRSLPAFKEKDAFLRLISENQVVVVSGETGCGKTTQLPQYILESETEAARGAPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKEILPHRPDLRLVLMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTRHRLTPSNQIDDYGQEKTWKMQKQAQAFRRKKSQIASAVEVQDALEVADFKGYSLRTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSRVLLLACHGSMASSEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQMPELLRTPLQSLCLQIKTLQLGSISEFLSKALQPPEPLSVENAVEYLKIIGALDGNENLTVLGHKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVTPSDKKDLAESAKAQFAAREYSDHLALVRAYEGWKDAETQQAGYEYCWRNFLSSQTLKAIESLRKQFFYLLKDIGLVNDKPETYNAWSHEVHLIRAVICAGLFPGISSVMNKDKSITLKTMEDGQSSVNGCVPRIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKSLDIDFMICMFCQLQDPTQETQSHSQLLSAVRLLVSEDHCDGRFVFGRQVLSQVKKETNSKSGVEAENFKNQLQSFLNRAGHDSPTYKTKQLKNSQFRSTVIFNGLNFVGQPCSSKKLAEKSAAAEALLWLKGDSHSSDGIDHASILLKKSNKKSTKKSFSGAKWS 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04883 1327 FunFam DExH-box ATP-dependent RNA helicase DExH3 382 599 - -
Vimu11g04883 1327 SMART ha2_5 885 976 IPR007502 GO:0004386
Vimu11g04883 1327 Pfam DEAD/DEAH box helicase 438 582 IPR011545 GO:0003676|GO:0005524
Vimu11g04883 1327 Gene3D - 382 599 IPR027417 -
Vimu11g04883 1327 SMART ultradead3 427 612 IPR014001 -
Vimu11g04883 1327 SMART DRBM_3 1230 1293 IPR014720 -
Vimu11g04883 1327 Gene3D - 865 967 - -
Vimu11g04883 1327 Gene3D - 1209 1297 - -
Vimu11g04883 1327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 863 IPR001650 -
Vimu11g04883 1327 Pfam Helicase associated domain (HA2) 886 965 IPR007502 GO:0004386
Vimu11g04883 1327 CDD SF2_C_RHA 680 831 - -
Vimu11g04883 1327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 439 598 IPR014001 -
Vimu11g04883 1327 CDD DEXHc_RHA-like 445 597 - -
Vimu11g04883 1327 Gene3D - 686 841 IPR027417 -
Vimu11g04883 1327 SMART helicmild6 717 823 IPR001650 -
Vimu11g04883 1327 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1042 1119 IPR011709 -
Vimu11g04883 1327 Pfam Helicase conserved C-terminal domain 691 822 IPR001650 -
Vimu11g04883 1327 FunFam DExH-box ATP-dependent RNA helicase DExH3 685 841 - -
Vimu11g04883 1327 Pfam Double-stranded RNA binding motif 1231 1292 IPR014720 -
Vimu11g04883 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 1002 IPR027417 -
Vimu11g04883 1327 PANTHER ATP-DEPENDENT RNA HELICASE 411 1141 - -
Vimu11g04883 1327 SUPERFAMILY dsRNA-binding domain-like 1228 1297 - -
Vimu11g04883 1327 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1229 1294 IPR014720 -
Vimu11g04883 1327 FunFam Putative ATP-dependent RNA helicase DHX36 865 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04883 Vimu-Chr11 68559853 68571650 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04883 K14442 - gmx:100791006 1719.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04883 11 68559853 68571650 Vimu11g04883 11 68559853 68571650 ECH