Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04881 ATGGGAAGCCCCGGATTCGGCAGTCAAAATAATGGGCAGCAGCAATGGTTAGGCATAACAGAGCCCATCTCATTGGGTGGACCCACTGAGTATGATCTGATCAGGACACGTGAACTTGAGAAGCATTTGCAAGATGCTGGCTTGTATGAGAATCATCAGGAGGCAGTTAGTAGGGAAGAAGTACTTGGCAGGCTAGACCAGATTGTGAAAATTTGGGTCAAAACCGTAAGTCGTGCAAAGGGACTAAATGAACAACTGGTGCAAGAGGCAAATGCCAAGATTTTCACTTTTGGCTCGTATCGACTTGGGGTACATGGTCCTGGAGCAGATATAGACGTTCTTTGTGTGGGGCCAAGATATGCATCAAGAGATGAAGATTTCTTTGGCGAGCTGCATAAGATGCTATCTGAGATGCCAGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTACCAGTGATGGGGCTCAAGTTCAATGGCGTTTCAATAGATCTTCTTTATGCAAAATTATCTTTCTGGGTCATTCCTGAAAACTTAGATATATCACAGGAGTCAATATTACAAAATGCAGATGAGCAAACTGTCCGTAGTCTTAATGGTTGTAGAGTGGCTGATCAAGTCTTGCGTTTGGTTCCAAATATTCAGAATTTTCGAACAACATTGAAGTGCATGAAGTTTTGGGCAAAGCATCGTGGTGTTTATTCGAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCGTTGCTTGTTGCACGAATATGCCAGTTATTTCCAAATGCACTGCCGAATATGTTAGTGTCTCGATTCTTCAGAGTATATACAAAGTGGCGTTGGCCAAATCCAGTAATGCTTTGTGGTATTGAAGAGGGATCCCTTGGACTTCAAGTTTGGGATCCCAGAAGATATCCCAAAGATAGATCTCATCTAATGCCAATAATTACTCCTTCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTCAAGTACATTGCGTATTATGATGAAGGAATTTCAGAGGGGAAATGAAATATGTGAGGCTATGGAGGCTAAGAAGGCCGATTGGGACACTCTTTTTGAGCCTTTTCCCTTCTTTGAGGCTTATAAGAATTATTTGCAGATAGAGATATCAGCGGAGAGTGGTGACGATCTTAGAAAATGGAAAGGGTGGGTTGAGTCTCGCCTGCGCCAGTTGACATTGAAAGTGGAGAGGCACACCTATGGCATGCTTCAGTGTCATCCACATCCTGGTGAGTATCCTGACAAATCCAGACCTTTCCACTGCTCCTACTTCACGGGACTGCAACGTATGCAAGGTGTTCCTGTCAGTGGTGCTGATGTTTCACAGTTTGATATAAGACTAAGTGTTGAAGAATTTAAGCATTCTGTCAACATGTACACTCTATGGAAACGTGGAATGGATATCCATGTCTTTCATGTAAAACGTCGTAGTATACCCACCTTCGTATTTCCTGGTGGCCTTCGTCCTGCACATCCATCTAAACTAGCTTGGGAGAGTAAGCGGGGTTCAGAACTAAGAGCCAACCATGGCAGGAAGAGAAAACTAGCTGAAGATAATGCGGATAGCTTGAGAAATTCCAAGTCCCTTGCATCTTTGTCTCCCTCCACCAGGGAAGTTCGTCCTGTTGTCAATGCTAGTTGTTGCTATGAGAAATGTAGTGACTTGGAAATCATTAGTACCAGTGAAGAACAGAGTGAGAAACCTGATTTGGAATCTACAAGGGAGTGTCATGGGGATTGGGATGCCAATGGATCATCTACTTCAAAAGATGTTGAAAAGCTAGCTGTTGAGAAGATTATGTGTGATCCGAATGATGCATACTGTGTCTTTTCAGAGGAACCTGATGAGCTTGAAGATGAGTTTGAGTACAGAAATGAAGTCAAAGATTTTGGTGAGAATATGAAAAACAGCAGCAACTTAGACTCTTCAAACTCACAGGAAGCGATTATTCCTCAGAAGGAAACTACTTCTGCAACTTGTTTATACTCAAATGATGGTTCAGAAGACCTCGAGTCGGCGGAGCTGACGGTGCCATTATTTAGTGGGATCCCTGCACCTGTGCCACAGCGGAAGCCTCTTATC 2106 0.434 MGSPGFGSQNNGQQQWLGITEPISLGGPTEYDLIRTRELEKHLQDAGLYENHQEAVSREEVLGRLDQIVKIWVKTVSRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDVLCVGPRYASRDEDFFGELHKMLSEMPEVTELHPVPDAHVPVMGLKFNGVSIDLLYAKLSFWVIPENLDISQESILQNADEQTVRSLNGCRVADQVLRLVPNIQNFRTTLKCMKFWAKHRGVYSNVTGFLGGINWALLVARICQLFPNALPNMLVSRFFRVYTKWRWPNPVMLCGIEEGSLGLQVWDPRRYPKDRSHLMPIITPSYPCMNSSYNVSSSTLRIMMKEFQRGNEICEAMEAKKADWDTLFEPFPFFEAYKNYLQIEISAESGDDLRKWKGWVESRLRQLTLKVERHTYGMLQCHPHPGEYPDKSRPFHCSYFTGLQRMQGVPVSGADVSQFDIRLSVEEFKHSVNMYTLWKRGMDIHVFHVKRRSIPTFVFPGGLRPAHPSKLAWESKRGSELRANHGRKRKLAEDNADSLRNSKSLASLSPSTREVRPVVNASCCYEKCSDLEIISTSEEQSEKPDLESTRECHGDWDANGSSTSKDVEKLAVEKIMCDPNDAYCVFSEEPDELEDEFEYRNEVKDFGENMKNSSNLDSSNSQEAIIPQKETTSATCLYSNDGSEDLESAELTVPLFSGIPAPVPQRKPLI 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04881 702 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Vimu11g04881 702 MobiDBLite consensus disorder prediction 569 586 - -
Vimu11g04881 702 MobiDBLite consensus disorder prediction 569 596 - -
Vimu11g04881 702 MobiDBLite consensus disorder prediction 505 529 - -
Vimu11g04881 702 FunFam Nuclear poly(A) polymerase 4 364 481 - -
Vimu11g04881 702 PANTHER POLY A POLYMERASE 10 539 - -
Vimu11g04881 702 Gene3D Poly(A) polymerase predicted RNA binding domain 364 481 - -
Vimu11g04881 702 Pfam Nucleotidyltransferase domain 83 157 IPR002934 GO:0016779
Vimu11g04881 702 SUPERFAMILY Nucleotidyltransferase 18 211 IPR043519 -
Vimu11g04881 702 MobiDBLite consensus disorder prediction 505 543 - -
Vimu11g04881 702 FunFam Poly(A) polymerase alpha, putative 50 206 - -
Vimu11g04881 702 MobiDBLite consensus disorder prediction 640 665 - -
Vimu11g04881 702 CDD NT_PAP_TUTase 58 212 - -
Vimu11g04881 702 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
Vimu11g04881 702 Pfam Poly(A) polymerase central domain 18 362 IPR007012 GO:0043631|GO:1990817
Vimu11g04881 702 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 491 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vimu11g04881 702 Gene3D - 18 360 - -
Vimu11g04881 702 Pfam Poly(A) polymerase predicted RNA binding domain 365 422 IPR007010 GO:0003723|GO:0043631
Vimu11g04881 702 FunFam Putative poly(A) polymerase gamma 179 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04881 Vimu-Chr11 68542755 68549177 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04881 K14376 - gmx:100816915 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04881 11 68542755 68549177 Vimu11g04881 11 68542755 68549177 ECH