Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04868 ATGCAGTCTCATGCATCACAGATTCTTGGGTTCAAATTTCAATATTATCAACGCATGGAAGTTGTCAGTTCTGTTCCATTTGGGCTCTATAGACTCACAGCCTTGCTGGTGAAGCAGGATTTTATTGATCTTGATAGCATATACACTCATCTACTTCCCAGAGATGTTGAGGCATTTGAGCATTACAATACTTTCTCTTCCAAGCGACTTGATGAGGCTAATAAAATTGGAAGAATAAACCTTGCTGCGACTGGAAAAGATCTAATGGATGATGAGAAACAGGGGGATGTCAGTATAGATCTCTTTGCTGCCCTAGACCTTGAAACAGAAGCAACTGAAGAGCGGACAACTGAGCTTCAAACCAGTCAGACTTTGGGCTTGCTCACTGGCTTTCTTTCGGTTGATGACTGGTATCATGCATATCTATTATTTGAGCGCCTTTCACCACTCAATGCTGTGGAACATATTCAAATATGTGATAGTTTGTTCAGGCTTATTGAGAAGACCATCTGTTCAGCATATGATGTTGTCCGTCAGACACATCTTCAAAATCCTGGATCATCGTCAGGAGGCACTGATGTTATGGATGTTGATAACACTTCAGGATATAATTCTTTCATAGATCTTCCTAAGGAACTTTTTCAGATGCTTTCTTGTACTGGACCTTATCTCTACCGTGATACTGTACTGTTGCAGAAGGTTTGTAGGGTCTTGAGAGGTTATTACCTTTCTGCTCTTGAGCTTGTCAGTCGTGGCAATGGTGACTTGAATCCTCAATTGCATTTTCCTGGAAACCCTAACTTACATCTTAAGGAGGCACGGCTAAGGGTGGAGGATGCTTTAGGAGCATGTGTACTTCCTTCTCTGCAGTTAATTCCTGCCAATCCTGCTGTTGGGCAGGAGATATGGGAACTAATGAGTCTTCTTCCTTATGAGGTGCGATATCGTTTGTATGGTGAATGGGAAAAAGATGATGAGCGCATTCCTATGCTCTTAGCTGCAAGACAAACTGCCAAGTTGGACACTAGACGTATTTTGAAAAGGCTGGCAAAGGAAAATTTGAAGCAGCTAGGTCGGATGGTTGCAAAATTAGCTCATGCCAACCCAATGACTGTCCTCCGAACAATTGTTCATCAGATTGAGGCTTACAGAGACATGATTACTCCTGTAGTGGATGCATTTAAGTACCTGACTCAGCTTGAGTATGATATATTGGAATATGTTGTGATTGAGCGCTTAGCACTTGGTGGACGTGATAAGTTAAAGGACGATGGCCTTAATTTATCAGATTGGCTTCAATCTCTAGCCTCATTTTGGGGCCATCTGTGTAAGAAGTACCCATCAATGGAATTACGGGGCCTCTTCCAGTATCTTGTGAATCAGTTAAAAAAGGGGCAAGGAATTGAGCTTGTTCTACTGCAGGAGCTTATTCAACAAATGGCAAATGTCCAGTACACAGAGAACTTGACTGAGGAACAGCTTGATGCAATGGCAGGGAGTGACACTCTCAGATATCAAGCAACTTCTTTTGGTGTAACTCGGAATAATAAGGCATTGATAAAGTCAACTAGCAGACTGAGAGACGCATTACTTCCAAAAGATGAACCAAAGTTGGCAATCCCACTGTTACTACTTCTTGCTCAACATCGATCTCTAGCTGTCGTAAATGCAGATGCACCCTACATTAAGATGGTTAGCGAGCAGTTTGATAGATGTCATGGAACTCTGCTTCAATATGTGGAATTTCTTGGTAGTGCAGTCACCCCATCATCAAATTATGGCATTCTTATTCCGTCCCTCAATGACCTGGTCCACCTTTACCACCTGGACCCCGAGGTTGCTTTCTTGATATATCGTCCCATAATGAGGCTTTTCAAGTCTCAGAGAGATCCTGATATTTATTGGCCCTTGGATGATAAACGTGGTGCTAGTGATGCATCTTCTAACTTTGAGTCTGATCCTCTGGATAATTCCGGTAGTATGGTACTAAATCTTGGCTCTGCCCAAAATCCTATAAGTTGGTCGTATCTTCTTGATACTGTTAAAACCATGTTACCTCCAAAAGCATGGAATAGCTTATCTCCCGATCTTTATGCAACATTTTGGGGTCTTACATTATATGATCTGTATGTCCCGAAAAATCGATACGAGTCAGAAATAGGCAAGCTGCATGCAAATCTTAAATCATTGGAGGAGCTTTCTGACAATTCTAGCTCAGCAATTACAAAGAGGAAGAAAGAAAAGGAAAGAATTCAAGAATCTCTTGATCGGCTGATTAGTGAACTTCATAAACACGAGGAGAATGTTGCATCTGTTCATAAACGTCTTTCTCGTGAAAAAAAAATATGGTTAAGTTCCTGTCCTGACACCTTGAAGATCAACATGGAGTTTCTTCAGCGCTGTATTTTTCCACGCTGTACTTTCAGTATGCCAGATGCTGTTTATTGTGCTATGTTTGTCCACACACTTCATTCCCTCGGAACCCCTTTCTTTAACACAGTCAATCATATAGATGTTTTGATTTGTAAGACCCTACAACCTATGATATGCTGCTGCACTGAATACGAGGCAGGCAGGCTTGGTAGGTTTCTGTATGAGACTTTGAAGATTGCTTACTATTGGAAGAGTGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCAGGCTTTGCCGTTTACTATAGATATCCAGATAGTCAACGAGTTACATATGGGCAGTTCATTAAAGTACACTGGAAGTGGAGTCAAAGAATCACACGTTTACTAATTCAGTGTTTGGAATCTAGCGAGTACATGGAAATTAGAAATGCACTTATAATGTTGACAAAAATTTCTAGTGTTTTCCCAGTTACCCGGAAGAGTGGGATAAACCTTGAGAAGCGAGTAGCTAAGATTAAAAGTGATGAAAGAGAGGATCTTAAGGTGTTGGCAACTGGTGTTGCAGCAGCATTGGCTGCTAGGAAGCCTTCTTGGGTAACTGATGAAGAATTTGGTATGGGTTATCTTGAGTTGAAACCTGCACCAACTGTGACTAAATCTTCAGCTGGAAATTCAGCAACTGTGCATGGTGGGATGAATCTCAATGTTTCACAAAACGAATCTGCCAGTGGAAAACATGTGGACTCTGGAACCACTGCCAAAGATCAGGTAATAAGAACAAAATCTGCAGATGGAAAGTCTGAAAGAACTGAAAGCATGACTGTGACAAAATCTGATTCTAGCCATACAAAAGTCAAGAGTGGTTCAATGGTAAATGGATTAGATGCCCAAACATCCTCGATCTTACCTTCTATACAATCTGGGGTGTCAAAGTCTATGGAAAACTCAAAGCAAGTGGAAGAATCGATAAATAGATCATCAGATGAACATGGAACAAGAAATGCTGAGTCAAGAGCTTCAGCAAAGCGTTCGGTGCCTACTGGTTCACTTTCAAAACCATCAAAACAAGACCCTGTAAAAGAAGATAGTAGGTCTGGAAAACCTGTTGCTAGAACTTCAGGCTCCTTGAGTAGTGACAAGGATCTACAAACCCATGCGTTGGAGGGAAGACACAGTGGAACTACCAATGTAACTTCTTTAGTCAGTGCTAATGGTAACACCATTTCAGGTTCTACTAAAGGTTCAAACCCACCAGTAAGGATTTCATTGGATGGTCCTGGTAATGAATCAAAGGCCGAGGCTGGAGTTGCCAAGTCTTCTGATAGTAGAGCATCTGTGGTGAAGGATGAAGGAAATGATACTACTGATTTCACTAGAGGATCCTCTTCTCGCGTAGTTCATTCCCCCAGGCATGAAAACACAGGAATCACTTCAAAATCAAATGAAAAAGTTCAGAAGAGAGCCAGTTCTGCTGAAGAACCAGACAGACTAGGTAAACGACGAAAAGGAGATGTTGAGGTAAGAGATTTAGAAAGTGAAGTTCGATTCTCTGAAAGAGATAAGTTGATGGATCCTCGCTTTTCTGATGACAAATTGGGACCAGAGGAACATGGTCTGTACAGGGCAGGTGATAAGTCACTGGAACGGCCAAAAGACAAGGGCAATGAAAGATATGAGAGGGACCACAGGGAAAGATTAGACCGTATGGACAAGTCTCGGGGTGATGACTCTGTAGCAGAAAAACCTAGAGATAGGTCCCTTGAAAGATATGGAAGAGAACGATCTGTTGAGAGATTGCAAGAGAGGGGTAGTGAGAGGAGTTTTAATAGACTTCCTGAGAAAGCTAAGGATGAAAGAAGCAAGGATGATAGAAATAAGTTACGATACAGTGATGCATCAGTAGAAAAATCACATGCTGATGATCGCTTCCATGGTCAAAACTTGCCTCCACCACCCCCTTTACCTCCTAATATGGTTCCTCAATCTTTGGGAGCTGGCAGGCGTGATGAAGATGCTGATAGGAGGTATGGAGCTACGAGGCACTCTCAAAGACTTTCTCCAAGGCATGAAGAAAAGGAACGGAGACGATCAGAAGAGACTGTGGTTTCTCAGGATGATTCAAAACGCCGAAAAGAAGATGATTTTCGAGATCGAAAACGTGAAGAGATTAAGGTTGAAGAGAGGGAGAGAGAAAGAGAGAAAACTAATGTGCTAAAGGAAGACTTGGATTTAAATGCCGCATCCAAGAGACGGAAACTTAAGAGGGAGCATCTAGCAACTGGTGAACCTGGGGAGTACTCACCAGTGGCTCCTCCACCTCCTCCCCCTGGTATTGGTATGTCACTGGGGTATGATGGAAGGGACAGGGGAGACAGAAAGGGACCCATCATCCAGCATCCAAACTACATAGATGAACCAAATATCAGGATTCACGGTAAAGAGGTGGCCAGCAAGTTGAATCGCCGTGATTCAGACCCTATTAGCTTGTATGATCGTGAATGGGATGATGAGAAGAGACAAAGAGCTGATCAAAAGCGGAGGCACCGGAAGTAG 4935 0.4233 MQSHASQILGFKFQYYQRMEVVSSVPFGLYRLTALLVKQDFIDLDSIYTHLLPRDVEAFEHYNTFSSKRLDEANKIGRINLAATGKDLMDDEKQGDVSIDLFAALDLETEATEERTTELQTSQTLGLLTGFLSVDDWYHAYLLFERLSPLNAVEHIQICDSLFRLIEKTICSAYDVVRQTHLQNPGSSSGGTDVMDVDNTSGYNSFIDLPKELFQMLSCTGPYLYRDTVLLQKVCRVLRGYYLSALELVSRGNGDLNPQLHFPGNPNLHLKEARLRVEDALGACVLPSLQLIPANPAVGQEIWELMSLLPYEVRYRLYGEWEKDDERIPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSDTLRYQATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLLAQHRSLAVVNADAPYIKMVSEQFDRCHGTLLQYVEFLGSAVTPSSNYGILIPSLNDLVHLYHLDPEVAFLIYRPIMRLFKSQRDPDIYWPLDDKRGASDASSNFESDPLDNSGSMVLNLGSAQNPISWSYLLDTVKTMLPPKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIGKLHANLKSLEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVHKRLSREKKIWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPDSQRVTYGQFIKVHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPTVTKSSAGNSATVHGGMNLNVSQNESASGKHVDSGTTAKDQVIRTKSADGKSERTESMTVTKSDSSHTKVKSGSMVNGLDAQTSSILPSIQSGVSKSMENSKQVEESINRSSDEHGTRNAESRASAKRSVPTGSLSKPSKQDPVKEDSRSGKPVARTSGSLSSDKDLQTHALEGRHSGTTNVTSLVSANGNTISGSTKGSNPPVRISLDGPGNESKAEAGVAKSSDSRASVVKDEGNDTTDFTRGSSSRVVHSPRHENTGITSKSNEKVQKRASSAEEPDRLGKRRKGDVEVRDLESEVRFSERDKLMDPRFSDDKLGPEEHGLYRAGDKSLERPKDKGNERYERDHRERLDRMDKSRGDDSVAEKPRDRSLERYGRERSVERLQERGSERSFNRLPEKAKDERSKDDRNKLRYSDASVEKSHADDRFHGQNLPPPPPLPPNMVPQSLGAGRRDEDADRRYGATRHSQRLSPRHEEKERRRSEETVVSQDDSKRRKEDDFRDRKREEIKVEEREREREKTNVLKEDLDLNAASKRRKLKREHLATGEPGEYSPVAPPPPPPGIGMSLGYDGRDRGDRKGPIIQHPNYIDEPNIRIHGKEVASKLNRRDSDPISLYDREWDDEKRQRADQKRRHRK 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1162 1212 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1023 1052 - -
Vimu11g04868 1644 Pfam THO complex subunit 2 N-terminus 204 359 IPR032302 -
Vimu11g04868 1644 Pfam THO complex subunit 2 N-terminus 4 185 IPR032302 -
Vimu11g04868 1644 Coils Coil 713 733 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1115 1131 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1250 1278 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1132 1148 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1023 1644 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1070 1114 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1600 1636 - -
Vimu11g04868 1644 Pfam Transcription- and export-related complex subunit 361 436 IPR021726 -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1053 1069 - -
Vimu11g04868 1644 PANTHER THO2 PROTEIN 2 1545 IPR040007 GO:0000347|GO:0006397|GO:0006406
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1279 1437 - -
Vimu11g04868 1644 Coils Coil 1510 1530 - -
Vimu11g04868 1644 MobiDBLite consensus disorder prediction 1460 1555 - -
Vimu11g04868 1644 Coils Coil 741 775 - -
Vimu11g04868 1644 Pfam Transcription factor/nuclear export subunit protein 2 690 984 IPR021418 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04868 Vimu-Chr11 68424404 68444574 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04868 K12879 - gmx:100817413 2828.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04868 11 68424404 68444574 Vimu11g04868 11 68424404 68444574 ECH