Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04787 ATGGCGGGTTCTTCGATCATGGAGAACCTCTTCCAACGCTCGCTGGAGGATATGATCAAATCCATGCGTCTCCAACTCATCGGCGAAACTACCTTCATCTCCAAGGCCACGGAGGAGATCCGCCGGGAGATCAAATCTACCGACCAGCAAACCAAATCCACTGCGCTCCAGAAGCTCTCTTACCTCTCTGCCGTGCACGGCGTCGACATGTCCTGGGCGTCCTTCCACGTCGTCGAGGTCATGTCCTCCTCCAAGTTCGCGCACAAGAGGATCGGTTACCACGCCGCTTCCCAATCCTTTAACGACGACACGCCGGTGCTCCTACTCATCACCAACCAGCTCCGCAAGGACCTCTCCTCCACCAACGAATTCGAGGTAAGCCTCGCTCTCGATTTGTTGTCGCGAATTGCCACTGTCGACCTCGCTCGCGATTTGACGCCCGAGGTTTTCAAACTGCTCTCCACCACTAAGGTTTTCGTCAGGAAGAAGGCCATCGCCGTCGTTTTGAGGGTTTTCGATAAGTACCCCGACGCCGTTAGGGTTTGCTTCAAGCGCTTGGTTGAGAATCTCGAGAGTTCCGATCCTCTGGTTGTGACCGCCGTGATTGGAGTTTTCTGCGAGCTGGCTGCCAAGGATCCTAGGTCGTATCTTCCCTTGGCGCCGGAGTTTTATAGAATTTTGGTTGATTCTAAGAACAATTGGGTTTTGATCAAGGTGCTCAAGGTGTTTGCGAAGTTGGCTCCCTTGGAGTATAGATTAGGGAAAAGGATTGTTGAGCCTGTCTGTGATCACATGAGGAGGTCTGGGGCCAAGTCCTTGGTGTTTGAGTGTGTTAGGACTGTGCTCACTAGCTTGAGTGATTATGAGTCAGCTGTTAAGCTCGCGGTTGAGAAGGTTAGGGAGTTGGTGGTTGATCAGGATCCCAATCTTAGGTATCTTGGGCTACAAGCACTTTCGGTTGCTGTACCCAAGCACTTGTGGGCGGTCTTGGAGAACAAGGAAGCGGTGGTAAAGTCGTTGAGTGATGATGATTTGAATATCAAGATTGAGTCTCTGCGATTGTTGATGGCCATGGTATCTGACAGCCATGTTGCAGATATCTCCAGGGTGTTGCTTAATTATGCGTTGAAATCTGACCCTGGATTTTGCAACGAGATATTGGATTCCATTTTGAGGACATGTTCTAGAAATTTGTATGAGATTGTTGTTGACTTTGATTGGTACGTGTCTCTTCTTGGAGAAATGGCCACGATTCCTAATTGCCAAAAGGGGGAAGAGATTGAAACACAGCTTGTTGACATTGGCATGAGAGTTAAGGATGCTAGAATGGAGCTCGTTCGGGTGGGGCGTGATCTGTTGATTGACCCGGCATTACTGGGTAATGTGCACTTGCAAAGGATATTGTGTGCTGCTGCTTGGGTTGCTGGAGAGTATGTTGAGTTTGCAAGCAATCCCTTGGAACTCATGGATGCACTCCTACAGCCTCGTACCAGTCTCTTGCCACCATCCATCAGAGCAGTTTATATTAATTCTGTTCTTAAAATTTTAATTTTTTGTCTCGACTGCTACCTTTTGCAAAATGATGGTTCTGGATCTTTATATTCTGGTAATTTGGAAGGGGAACAATCAGAGTTGTTTAGTGCAAAAAATGACACCGAGGCTACGGAATTGGCAACTTGTGGAGGTTCAAATGACGAACAGGATGTTGGTTTTAACCCAAGGAATACAGCTGACTCTTCTGAAGATCTCTCTGTTGAAAATGGTATAGATAGAGTTGCTACTCATGGTAAAACATTTACATCTACTGGAGTGGGAAGGAAGAATTTCATGCACGAATCTATTGTAAGCTTATTGAACAGAATTGAATTAATTTTTGGCCCGCTAATAACAAACCAGGATGTTGAAGTGCTGGAGAGAGCACAAAACATACTTTCCCTTGTTCAGTTGATTAAAGAAGAAATAATTGATAATTCAGTCCAGAGTGTGGACACCGTAGAAAAGAAAGATACTCGAGTTTCAACTGTTATCAATTTGATGCGTGATGCTTTTACTACGGAACTTGGTCCAATCTCAGTAAGTGCACAGGGCAGAGTTGCTGTGCCGGAAGGACTAGTTCTTAAAGAAAATCTTGATGAATTACAAGCAATATGTGGTGATACTGAACTATCTTCATCAAGTTCGTTTGCCATAGGGGGCCCTCACGGTACCCCTATTTCTGATGCTTCTTCATCTAATCTTCTACAAAATGAAGAGTTAGGGCCTTTGAATGAATCCACATCCTTGATTGAACATCGTAAGAGGCATGGGTTATATTATCTTCCTTCGGAGAAGAGTGAGATTGTTCCAGATGGGTATCCTCGTGCAAATGATCCAAAGTCAAACAGTAATATAAATGATGAAGCTGCCGAACTAGTCAAGCTGACAGAGCAATCACTTCTTATGAAGAAAAGGACAAACCAAACAAAGCCCAGGCCGGTAGTAGTGAAATTGGATGATGGAGATCTGGCACCAATTTCAGTCAAAAGGCCAGAGCCTAGGGATGATTCTCTTTCTGGCGCCATACAAGATGTTCTTCTAGGAAGTGAAAGTGGACCAAGTGTGTCTCGAAGTTACCCTTCTAATAAGTCATCAAGGAAGCAGAAAGAGAAAAAGAAACTAAGCACGAATGGTCGATCTGAAATGAACGAAAATGCAGTTGATTCAGAAAAGCCTGACCCTGAAAGTGCAAATTCTAGTAGCAAAAATCATGGTCATAGTAAAGAGAGAAAACACAGAGGAAAAGAAAAGATTGTTGAGGGTGAAGAGCATGATCAGGAGGGAAAGAAAAAGAGTGGCCACCGCCATGGTAGGAGAAAAACTCATCACAGAGCGAAGTCACCTTTAAGTGTGGCTTCCCAAACTCCAGTCATTCCTGATTTTCTTTTGTAG 2928 0.4512 MAGSSIMENLFQRSLEDMIKSMRLQLIGETTFISKATEEIRREIKSTDQQTKSTALQKLSYLSAVHGVDMSWASFHVVEVMSSSKFAHKRIGYHAASQSFNDDTPVLLLITNQLRKDLSSTNEFEVSLALDLLSRIATVDLARDLTPEVFKLLSTTKVFVRKKAIAVVLRVFDKYPDAVRVCFKRLVENLESSDPLVVTAVIGVFCELAAKDPRSYLPLAPEFYRILVDSKNNWVLIKVLKVFAKLAPLEYRLGKRIVEPVCDHMRRSGAKSLVFECVRTVLTSLSDYESAVKLAVEKVRELVVDQDPNLRYLGLQALSVAVPKHLWAVLENKEAVVKSLSDDDLNIKIESLRLLMAMVSDSHVADISRVLLNYALKSDPGFCNEILDSILRTCSRNLYEIVVDFDWYVSLLGEMATIPNCQKGEEIETQLVDIGMRVKDARMELVRVGRDLLIDPALLGNVHLQRILCAAAWVAGEYVEFASNPLELMDALLQPRTSLLPPSIRAVYINSVLKILIFCLDCYLLQNDGSGSLYSGNLEGEQSELFSAKNDTEATELATCGGSNDEQDVGFNPRNTADSSEDLSVENGIDRVATHGKTFTSTGVGRKNFMHESIVSLLNRIELIFGPLITNQDVEVLERAQNILSLVQLIKEEIIDNSVQSVDTVEKKDTRVSTVINLMRDAFTTELGPISVSAQGRVAVPEGLVLKENLDELQAICGDTELSSSSSFAIGGPHGTPISDASSSNLLQNEELGPLNESTSLIEHRKRHGLYYLPSEKSEIVPDGYPRANDPKSNSNINDEAAELVKLTEQSLLMKKRTNQTKPRPVVVKLDDGDLAPISVKRPEPRDDSLSGAIQDVLLGSESGPSVSRSYPSNKSSRKQKEKKKLSTNGRSEMNENAVDSEKPDPESANSSSKNHGHSKERKHRGKEKIVEGEEHDQEGKKKSGHRHGRRKTHHRAKSPLSVASQTPVIPDFLL 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04787 975 MobiDBLite consensus disorder prediction 925 942 - -
Vimu11g04787 975 SUPERFAMILY ARM repeat 30 662 IPR016024 -
Vimu11g04787 975 PIRSF AP3_delta 1 969 IPR017105 GO:0015031|GO:0030123
Vimu11g04787 975 MobiDBLite consensus disorder prediction 858 975 - -
Vimu11g04787 975 Pfam Adaptin N terminal region 31 492 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vimu11g04787 975 PANTHER DELTA ADAPTIN-RELATED 1 974 IPR017105 GO:0015031|GO:0030123
Vimu11g04787 975 MobiDBLite consensus disorder prediction 943 958 - -
Vimu11g04787 975 Gene3D - 4 558 IPR011989 -
Vimu11g04787 975 MobiDBLite consensus disorder prediction 886 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04787 Vimu-Chr11 67963797 67966724 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04787 K12396 - gmx:100815221 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04787 11 67963797 67966724 Vimu11g04787 11 67963797 67966724 ECH