Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04781 ATGTTGTCTTCGGAGACCATCAATATCGCTGCAAGTACGCAGAAACTCGATGTTGACAATCGACTTGCTCTGCGATTCTACTACAGAATCGCCGATAATATCCTCAAACAGGCTGATATCTTTCGTGCAGAGAACAATATCGTCGATCTATATGTCATGCTCCTAAGATTTTCTAGGTTTTTGCCCTTGGTTGGTGTTAGTTTGGTCTCTGAGACGATACCACGTCACCGAGATTATAGATCATCTCCACAAATCAAGAAAGAAATTTTGAGAAAGAAATTGTTAAATTCTTTGAATGAGCTGGAGAAATTGAAACCAAAGGTGCAACAGAAGATCAATGACTTTAATAACAGCAGGCGAGCATACCACCATCAGAATGGGCTGAAAAATTGTTATTCAAATAATTTGATGGTTTCTCCAGTGAGAAAGCAATCTTTGGCTAGTTATGATCGAACAAAGGCAATCGTGCCAACTACACGAGAGTTTGTTTATCAAGGATCAAGGGGCCAGCAGTTTTCTAGTGTAAGGCCTGTGGAAGAAAATATGAGAAGACTATCTCTAAATCTCCTACGTCCAAAGGAGGAAACTCTCTCCAGACATTCTATTCTAGGTCCCAATGGCCTGAAAGGGCAGTGGCGACCACCTGCAAGTGATCAAGGGGTCAGGTATCCAACCATCATAGATTTGTCTCCAGTTGAAATTCCAAGTTCAGTTGTTCAAGCAATGGGACATCACCCTTTTTCCTGTTCCCACATCCCCTCCCTCTTGATCTTCCTTCAACAACCCTTGGAAGATGGATCTCTGAGTGAAAAAGATAATACCGTTTCAGAACAACAAAGATCAGATGTAGAATCATTTCTTACCCCGAGTGACAACTTCCAGGAAAAGCTTGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAATCCCTGCTCAAATAGAAGTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAGGATTTGATTCCAGCAGTGTCACCTCATGTTATTGAGGAAGGATGTATGAAAGAAATTCCATCATCAGATAGTATTGTTCGTGCAGAGTCTCCTCTGCAACTACACATTTCAACTTCTATGATGAAGAGTTTTATGAAGCTTGCCAAATCAAATACTGACAAAAATTTAGAGACTTGTGGCATTCTTGCAGGTTTGCTTAAAAACAGGAAATTTTATATTACAGCTCTAATAATCCCAAAGCAGGAGGCAACATCTAGTTCTTGCCAAGCTACAAATGAAGAGGAGATATTTGAAGTACAGGATAAGCAATCTCTTTTCCCCCTAGGATGGATCCACACACATCCCACACAATCTTGTTTCATGTCATCAATTGATGTACATACCCATTACTCGTATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTCATGGCACCAACAGACAGTTCAAGAAGCCATGGCATTTTTCGGTTGACAACCCCAGGTGGAATGTCGGTCATAAGACAATGCCAGCAACGTGGCTTTCATTCACACAATCAGCCTCCTGATGGTGGTCCCATTTACGATACTTGCACAGATGTTTACATGAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATGA 1623 0.4116 MLSSETINIAASTQKLDVDNRLALRFYYRIADNILKQADIFRAENNIVDLYVMLLRFSRFLPLVGVSLVSETIPRHRDYRSSPQIKKEILRKKLLNSLNELEKLKPKVQQKINDFNNSRRAYHHQNGLKNCYSNNLMVSPVRKQSLASYDRTKAIVPTTREFVYQGSRGQQFSSVRPVEENMRRLSLNLLRPKEETLSRHSILGPNGLKGQWRPPASDQGVRYPTIIDLSPVEIPSSVVQAMGHHPFSCSHIPSLLIFLQQPLEDGSLSEKDNTVSEQQRSDVESFLTPSDNFQEKLADEAPSLISFEATEIPAQIEVIRQPSPPPVLAEVQDLIPAVSPHVIEEGCMKEIPSSDSIVRAESPLQLHISTSMMKSFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATSSSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPTDSSRSHGIFRLTTPGGMSVIRQCQQRGFHSHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04781 540 PANTHER AMSH-LIKE PROTEASE 3 540 - -
Vimu11g04781 540 Pfam USP8 dimerisation domain 7 111 IPR015063 -
Vimu11g04781 540 ProSiteProfiles MPN domain profile. 366 494 IPR037518 -
Vimu11g04781 540 SUPERFAMILY JAB1/MPN domain 365 496 - -
Vimu11g04781 540 FunFam AMSH-like ubiquitin thioesterase 3 3 128 - -
Vimu11g04781 540 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 363 469 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vimu11g04781 540 FunFam AMSH-like ubiquitin thioesterase 3 351 540 - -
Vimu11g04781 540 CDD MPN_AMSH_like 365 540 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vimu11g04781 540 Gene3D Cytidine Deaminase, domain 2 351 540 - -
Vimu11g04781 540 Gene3D - 3 130 - -
Vimu11g04781 540 Coils Coil 91 118 - -
Vimu11g04781 540 SMART pad1_6 365 493 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04781 Vimu-Chr11 67930768 67936906 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04781 K11866 - gmx:100800636 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04781 11 67930768 67936906 Vimu11g04781 11 67930768 67936906 ECH