Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04740 ATGGGGGAAAACATGGAGGCGTGTGCAACTTTAGATTACCCCAATCTTCCAAGGTTTCCCATGACAAGGAGTTGCTCGCTCCTACTAGTGCAGTCTTCAGTCTTGTCTGCCAACTATGCATCTTTGGTGACAGCTCAGCTTGTTGTGTTGACATCACACATGGCTGGACTGGGACTTCCTGATAATGATGCTTGGTACATGATTGAAACAATTGCGGAAAGGAACAGCATTGGATCCAAGCAATTTATAAAAATCAGAGGGTTCTTATCTCATATCCAGCAATTACGTAATGGATACTGGGGCATCTCCTCAGCAAAGGCACAGTCTGTGTTATCACTTGGAATAACATCCCCACATCCTAAAGACGCGAAAGATGAGAACCAGCAACCCACTGAGGCAACAGGTGTTGGTAGAAGCTGGGTGCAGAGTATGTTTACCAGAAATCCAACAATTAGATCCAGCTCATTTAGTCGTGTTCGTAAATGGACGACTGATGGAAGCAACTCTGTTCAAGCTTCAAATGATAATGGGACACCTCGCAAACAAGATCTGTTGAGTGGTGGCCAAAAAAAGCTTCAAACCAATGTTCGCACACTTAGGGGTCATAATGGTGCAATTACTGCTCTCCATTGTGTTACGAAAAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAGGATGCTGGTTTCTTTATTAGTGGAAGCACAGATTGCTCAGTTAAGATATGGGATCCTAGTCTTCGTGGTTCTGAACTTAGGGCAACTTTAAAAGGCCATGCTAGAACTGTCCGGGCCATAAGTTCAGACAGGGGGAAGGTGGTGTCAGGATCTGATGATCACTCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTACTAGAAGAGCTTAATGGCCATGATGGACCGGTCAGCTGTGTGCGCACGCTCTCAGGTGAACGGGTGTTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTCTATGCATGGAATATGATGACAATGTGGGAGTGTTGGCTGCTGGTGGAAGAGACGTGGTTGCTAACATATGGGACATCCGTGCTAGTAGGCAGATGCATAAACTTTCAGGACACACACAATGGATACGGTCTATAAGAATGGTTGGTGACACTGTGATTACCGGTAGTGATGATTGGACGGCAAGAATGTGGTCTGTTAACCGAGGAACCTGTGATGCTGTCTTAGCTTGCCATGCAGGGCCAATATTATGTGTTGAATATTCCTCTTTAGACAGAGGAATAATTACAGGAGGCATACGGTGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCGGTCAATGCTGGGGAGCACTGGCTAGGGATTGGAGCAGCTGATAATTCTTTGTCGCTTTTTCATCGGCCCCAAGAAAGACTAGGTGGTTTTTCTGGTGCTGGGCCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCTCAGAAAACAGTTGCTATGCTAAGGTGCATATGTGGCTGGAGAATGTATTGTATGCCTGTTGTTATCTCCATTTGTTATTGGTTGCTTTCCTGGGTTGATTTTGTTCGTATTATTATGACATCCAGCGGCGGTCGCAATGGGCTTCTAAGGCTGTGGGATGCAACCATTAATATTTGA 1686 0.4537 MGENMEACATLDYPNLPRFPMTRSCSLLLVQSSVLSANYASLVTAQLVVLTSHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGISSAKAQSVLSLGITSPHPKDAKDENQQPTEATGVGRSWVQSMFTRNPTIRSSSFSRVRKWTTDGSNSVQASNDNGTPRKQDLLSGGQKKLQTNVRTLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHARTVRAISSDRGKVVSGSDDHSVLVWDKQTTQLLEELNGHDGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAGGRDVVANIWDIRASRQMHKLSGHTQWIRSIRMVGDTVITGSDDWTARMWSVNRGTCDAVLACHAGPILCVEYSSLDRGIITGGIRCAKNVTIHNAAILSVNAGEHWLGIGAADNSLSLFHRPQERLGGFSGAGPKMAGWQLYRTPQKTVAMLRCICGWRMYCMPVVISICYWLLSWVDFVRIIMTSSGGRNGLLRLWDATINI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04740 561 CDD WD40 195 477 - -
Vimu11g04740 561 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Vimu11g04740 561 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Vimu11g04740 561 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Vimu11g04740 561 Gene3D - 249 486 IPR015943 GO:0005515
Vimu11g04740 561 SMART WD40_4 411 452 IPR001680 GO:0005515
Vimu11g04740 561 SMART WD40_4 288 326 IPR001680 GO:0005515
Vimu11g04740 561 SMART WD40_4 371 408 IPR001680 GO:0005515
Vimu11g04740 561 SMART WD40_4 248 285 IPR001680 GO:0005515
Vimu11g04740 561 SMART WD40_4 329 368 IPR001680 GO:0005515
Vimu11g04740 561 SMART WD40_4 192 243 IPR001680 GO:0005515
Vimu11g04740 561 SUPERFAMILY WD40 repeat-like 175 441 IPR036322 GO:0005515
Vimu11g04740 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 285 - -
Vimu11g04740 561 MobiDBLite consensus disorder prediction 156 189 - -
Vimu11g04740 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 294 IPR001680 GO:0005515
Vimu11g04740 561 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 31 466 - -
Vimu11g04740 561 ProSitePatterns Trp-Asp (WD) repeats signature. 355 369 IPR019775 -
Vimu11g04740 561 Gene3D - 126 248 IPR015943 GO:0005515
Vimu11g04740 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 417 IPR001680 GO:0005515
Vimu11g04740 561 FunFam DENN domain and WD repeat-containing protein SCD1 153 376 - -
Vimu11g04740 561 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Vimu11g04740 561 MobiDBLite consensus disorder prediction 116 138 - -
Vimu11g04740 561 Pfam WD domain, G-beta repeat 374 408 IPR001680 GO:0005515
Vimu11g04740 561 Pfam WD domain, G-beta repeat 194 243 IPR001680 GO:0005515
Vimu11g04740 561 Pfam WD domain, G-beta repeat 253 285 IPR001680 GO:0005515
Vimu11g04740 561 Pfam WD domain, G-beta repeat 290 326 IPR001680 GO:0005515
Vimu11g04740 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 335 IPR001680 GO:0005515
Vimu11g04740 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 243 IPR001680 GO:0005515
Vimu11g04740 561 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 329 - -
Vimu11g04740 561 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 377 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04740 Vimu-Chr11 67617856 67622033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04740 224 409 Miscellaneous Gene Families AT5G08390 24.607 2.99e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04740 - - pvu:PHAVU_002G3153001 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04740 11 67617856 67622033 Vimu11g04740 11 67617856 67622033 ECH