Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04739 ATGAACATTTGTAGTTTTTGGGTATCGTCCATGAAAATCCCCTTTCACGGGTGTCGATTCTCAAGGCCCTTCTTCTCTCTATCTTCTTCGTCTCGCAATCGCATTATGACCATTCAAAGTTCTTCTTCTTCTACTTCTTCCGCTTCCATATCAACCGAGTCCAAAGAGAAGAAGAAGGAAAATTTACCTTGGTTAATCGTTGGCCTCGGTAATCCAGGCAAAAAGTACGCTGCCACTCGCCACAATGTGGGCTTTGAGATGGTTGATGCCATAGCTGAAGCTGAAGGGATATCTATGAACACTGTTTCCTTCAAAGCTTTATTTGGGAAAGGTTTAATAGGTGATGTCCCAGTCATACTTGCAAAACCACAGACTTTTATGAATTCTAGCGGTGAATCTGTTGGGGCCATAGTTTCGTACTACAAGATTCCACTAAAGCAAGTACTTGTGATCTTTGATGACTTGGATTTACCTTTTGCTAAATTGCGGCTTCTACCAAAGGGTGGACATGGAGGCCACAATGGGCAAAATATTAGGTTGTGGGATGCTAGACTCGCATGCCTTGTCTTGGAAAGGAACTATTTATTTTCATCTGATGAGGTTAAATTTTTTGTTGTCTGGCTAATGATCAAGATGATATCCTCGCTCACTCTTGGGGCAAAGGGTGTTCGAGTGGCTTGCAAGTTTAAGAAACTCATTTTTTGTGTTGGGATTGGAGGGGGGGAGTGCATTGGTGGAACTGTATATAAGTTTTGGAAGAGGGTGGAAAGAAGAATGAAGAGTGTTATTAATCATTTCAAAGGGAATACTGGTTTTCCTCGTTTAAGAATTGGCATCGGACGACCTCCCGGTAAAATGGATCCTGTAGCATTTGTTCTTCGCACGTTCACTAAACAGGAAAGAGAAGAGTTGAGTTTTACATTACAAGATGGAATAGAAGCTCTTCGGATTCTTTTGCTTGAAGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATGGAGCAAACAGGTTGA 1023 0.4125 MNICSFWVSSMKIPFHGCRFSRPFFSLSSSSRNRIMTIQSSSSSTSSASISTESKEKKKENLPWLIVGLGNPGKKYAATRHNVGFEMVDAIAEAEGISMNTVSFKALFGKGLIGDVPVILAKPQTFMNSSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGQNIRLWDARLACLVLERNYLFSSDEVKFFVVWLMIKMISSLTLGAKGVRVACKFKKLIFCVGIGGGECIGGTVYKFWKRVERRMKSVINHFKGNTGFPRLRIGIGRPPGKMDPVAFVLRTFTKQEREELSFTLQDGIEALRILLLEGFDKSATFVNSAKKMEQTG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04739 340 SUPERFAMILY Peptidyl-tRNA hydrolase-like 259 331 IPR036416 GO:0004045
Vimu11g04739 340 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 76 89 IPR018171 GO:0004045
Vimu11g04739 340 Gene3D - 253 339 IPR036416 GO:0004045
Vimu11g04739 340 Hamap Peptidyl-tRNA hydrolase [pth]. 63 324 IPR001328 GO:0004045
Vimu11g04739 340 Pfam Peptidyl-tRNA hydrolase 65 175 IPR001328 GO:0004045
Vimu11g04739 340 Pfam Peptidyl-tRNA hydrolase 259 326 IPR001328 GO:0004045
Vimu11g04739 340 Gene3D - 48 179 IPR036416 GO:0004045
Vimu11g04739 340 SUPERFAMILY Peptidyl-tRNA hydrolase-like 63 175 IPR036416 GO:0004045
Vimu11g04739 340 PANTHER PEPTIDYL-TRNA HYDROLASE 54 331 IPR001328 GO:0004045
Vimu11g04739 340 NCBIfam aminoacyl-tRNA hydrolase 64 175 IPR001328 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04739 Vimu-Chr11 67611798 67615583 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04739 K01056 - gmx:100526866 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04739 11 67611798 67615583 Vimu11g04739 11 67611798 67615583 ECH