Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04560 ATGGCTGGCTCCTTGGCAAGCCGTTCTCTGATTGTTCTTGCCATTATATCCTTAGGATGTCTATTTGCAATTTCCATTGCAAAGGAGGAAGCTACCAAGTTGGGGACGGTCATTGGGATTGATCTTGGAACGACCTATTCATGTGTTGGTGTTTATAAGAATGGCCATGTTGAAATCATAGCCAATGACCAAGGTAACCGTATCACTCCATCGTGGGTTGCCTTCACCGACAGTGAGAGACTCATTGGGGAGGCTGCCAAAAATCAGGCAGCTGTCAACCCCGAAAGGACCGTCTTCGATGTTAAGAGACTTATTGGAAGAAAGTTTGAAGATAAGGAAGTTCAAAGAGACATGAAGCTCGTTCCTTACAAAATTGTCAACAAGGATGGAAAACCTTACATACAGGTAAAAATTAAGGATGGTGAGACTAAGGTGTTCAGCCCTGAGGAAATCAGTGCCATGGTTCTGATTAAGATGAAGGAAACCGCGGAAGCATTCCTTGGGAAGAAAATTAATGATGCTGTGGTCACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGACGCTGGTGTCATTGCTGGTCTCAATGTTGCTAGAATTATTAACGAACCCACTGCTGCCGCCATTGCTTATGGATTGGACAAGAAAGGTGGCGAGAAGAACATTCTAGTCTTTGATCTTGGAGGTGGGACATTCGATGTCAGTATCTTGACAATTGATAATGGTGTTTTTGAGGTTCTTGCAACAAATGGAGATACTCATCTTGGAGTTTTCTCTGATGTTATCGCCTGCTGTGTCTACTTCCCCTTACCAGGTGAGGACTTCGATCAGAGAATAATGGAGTACTTTATTAAATTGATCAAGAAGAAGCATGGAAAGGATATCAGCAAGGACAACAGAGCACTTGGCAAGCTCAGGAGAGAGGCAGAGCGTGCGAAGAGAGCTCTCAGTAGCCAGCACCAGGTCCGCGTGGAAATTGAATCACTTTTTGATGGTGTTGATTTCTCTGAGCCACTCACCCGAGCTCGGTTCGAGGAGTTGAACAATGACTTGTTCCGGAAGACAATGGGACCAGTGAAGAAGGCTATGGAAGATGCTGGATTACAGAAGAATCAGATCGATGAGATTGTTCTCGTCGGTGGAAGCACAAGGATTCCGAAGGTTCAACAGCTTTTGAAGGATTACTTTGACGGAAAGGAGCCAAACAAGGGTGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGCGGAGAGGGCGGTGAGGAAACCAAAGATATCCTTCTCCTGGATGTGGCTCCCCTCACCCTTGGAATTGAAACTGTCGGTGGAGTGATGACAAAGTTGATTCCCAGAAACACTGTTATCCCTACAAAGAAATCTCAGGTGTTTACCACCTATCAGGACCAGCAGACCACCGTGTCCATTCAGGTTTTCGAAGGTGAGAGGAGTCTCACAAAGGACTGCCGTCTGCTTGGGAAATTTGATCTTTCAGGAATTCCGCCAGCTCCAAGGGGTACCCCTCAAATTGAAGTGACCTTTGAAGTTGACGCAAATGGCATCCTGAATGTGAAAGCAGAAGACAAAGGCACTGGAAAATCAGAGAAGATAACGATTACAAATGAGAAGGGACGTCTGAGCCAGGAGGAAATCGAGAGAATGGTCCGTGAGGCGGAGGAGTTTGCGGAGGAAGACAAAAAGGTTAAAGAGAGGATTGATGCTCGTAACAGTCTTGAAACCTACGTCTACAACATGAAAAATCAGATCAGCGACAAGGACAAGCTTGCTGACAAGTTGGAGTCAGATGAAAAGGAGAAAATAGAGAGTGCAGTGAAGGAAGCATTGGAATGGCTTGATGACAACCAGAGTGTTGAGAAAGAGGAATATGAGGAGAAGCTTAAGGAGGTGGAAGCCGTTTGCAACCCAATCATCAGTGCTGTGTATCAGAGATCAGGAGGAGCCCCAGGCGGTGATGCATCAGGCGAGGACGAGGAAGACTCTCACGATGAGCTCTAG 2046 0.4629 MAGSLASRSLIVLAIISLGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLIKMKETAEAFLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGVFSDVIACCVYFPLPGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQISDKDKLADKLESDEKEKIESAVKEALEWLDDNQSVEKEEYEEKLKEVEAVCNPIISAVYQRSGGAPGGDASGEDEEDSHDEL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04560 681 Coils Coil 561 581 - -
Vimu11g04560 681 ProSitePatterns Heat shock hsp70 proteins family signature 1. 40 47 IPR018181 -
Vimu11g04560 681 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 431 585 IPR029047 -
Vimu11g04560 681 FunFam Heat shock protein ssb1 99 154 - -
Vimu11g04560 681 SUPERFAMILY Actin-like ATPase domain 222 428 IPR043129 -
Vimu11g04560 681 Gene3D - 38 424 - -
Vimu11g04560 681 Coils Coil 595 615 - -
Vimu11g04560 681 Gene3D - 586 660 IPR029048 -
Vimu11g04560 681 Pfam Hsp70 protein 37 659 IPR013126 GO:0005524|GO:0140662
Vimu11g04560 681 SUPERFAMILY Actin-like ATPase domain 35 219 IPR043129 -
Vimu11g04560 681 PANTHER HEAT SHOCK PROTEIN 70KDA 37 623 IPR013126 GO:0005524|GO:0140662
Vimu11g04560 681 FunFam Luminal-binding protein 5 585 660 - -
Vimu11g04560 681 FunFam Heat shock protein 70 38 229 - -
Vimu11g04560 681 FunFam Endoplasmic reticulum chaperone BiP 275 358 - -
Vimu11g04560 681 CDD HSPA5-like_NBD 35 424 IPR042050 -
Vimu11g04560 681 ProSitePatterns Heat shock hsp70 proteins family signature 3. 380 394 IPR018181 -
Vimu11g04560 681 Coils Coil 629 649 - -
Vimu11g04560 681 ProSitePatterns Heat shock hsp70 proteins family signature 2. 228 241 IPR018181 -
Vimu11g04560 681 Gene3D - 220 409 - -
Vimu11g04560 681 Coils Coil 299 319 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 409 429 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 436 455 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 517 533 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 64 76 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 36 49 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 234 244 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 174 194 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 377 393 - -
Vimu11g04560 681 PRINTS 70kDa heat shock protein signature 86 94 - -
Vimu11g04560 681 MobiDBLite consensus disorder prediction 658 681 - -
Vimu11g04560 681 Gene3D Actin; Chain A, domain 4 260 358 - -
Vimu11g04560 681 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 432 589 IPR029047 -
Vimu11g04560 681 FunFam Heat shock 70 kDa 431 585 - -
Vimu11g04560 681 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 583 666 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04560 Vimu-Chr11 66342494 66345919 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04560 11 681 Miscellaneous Gene Families AT5G42020 89.614 0.0 1209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04560 K09490 - gmx:547838 1245.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04560 11 66342494 66345919 Vimu11g04560 11 66342494 66345919 ECH