Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04556 ATGGCCATCCTCTCTCAATCCACTGCTAGTTTCTCACCTTCCTTCGTCTCCACTCGCTCCGATTTCACTCGCTTCCCCTGCCGCGTCACCTTCCGCCGCGGCCTCGCCGTCTCCTCCTGCTTCAACTCCTCCAAGTCCCCTGGCGCCGGGGGTTTCCTCTCGCCGGACAACGGCGGCGAAGTCTCCTACGAGCTGCACCACGACTTCTCGCCGCAGCGACGCCGCAGCGGCTCGCCGGTGTTCGTCACGCTGCCGGTGAATTCCGTCAGCCGGGAGGGCGGCCGTGTGTTGAGGCCCAAGGCGATGATGTTCTCGCTCAAGGCGCTCGCCACGGCCGGCGTCGAAGGTGTCGTGGTCGAGATTTGGTGGGGCTTGGTTGAGAAGAACAAACCTAGGGTTTACGACTGGAGAGGGTACGAGGAACTTGTTGCGATGGCATGCAAGTGTGGCCTCAAGGTTCGAGCGGTTCTCGCGTTTCATCAGCATGGCGCGGGACCTGATGATCCCAATTGGTATGTGGAAATTGGATCCCCACCCTCATACTCTGGAAGTTTGTCCCCCTTGTGTAGGATACCGCTTCCTCTATGGGTGCTTGATGAGATAAAGAAAGATGTCGAGTTAGCATATTGTGACCGGTTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTTCCTGTGCTGTGTGGGCGTTCTCCTATTCAAGTGTATGCTGATTTTATGAGGGATTTTAGGGACACTTTCAGGTCTTTGCTTGGTGTTATCATCACAGTAAGGTTCTATATGATTTTGGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCCTTCTCTCCACAAGAGCCGAATTTGGCATGGTCTCAAGAACTTGGAGAATTTCAATGCTATGATAAGTATATGCTTGCTTCTCTTAATGCCTCTGCAAGAAATATTGGAATGCGTGAATGGGGAAATGGTGGCCCATTTGGTACTGGAAGTTTGATGCAAAATCCCGAGCATACTGATTTTTTCAAAAATGATGGTGGTTCTTGGGACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAGGTATGTTGCTACTGCATGGGGAAAGGATTTGTAAGGAAGCTGAAACTATATTTAGGGGTACAGAGGTCCATATATCAGCAAAATTGGCTGTCATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGCTAACTGCTGGCTATTATAATACTTTTAACCGGGACGGATACTTATCCATTGCTCGCATGTTTAGCAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCAGTAATGCAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTCGGCAGCTTTTGTTGGCTGCCAGACTCTGTGACCTAGCACTTGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCGTTTACTCAGGTGCTGAAGATGTCAAAATTTTACTCGAATGGGATAGAGAAGCGACCTTTCTCGTTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTAAGACAAATGTCTAATGGAAATATTTTTCGAGCCAGATTATATTCTGTTGGTGACACACGGTTTAAGACCGCACCAGTGATGCCAGAGGCGAGATTGTTGTACCACCTATATCAAAAATCTGATGACCTCTGGTCTAATGTTGTGAAATGTGTAGTAACTGCTGATTCTTCAAATGATTCTTTTATTGCTTTCCGGCAAGAAGTTACTTCCCCTAAGAGATATAATTTAAAACTAGTTACTGCTGAAATTTTGAGCCCTTTCTTTCTAATGTTCTGTTCTGTTGAGGTGAACTCCTGGTATGCTGGTTTTATATAG 1911 0.4631 MAILSQSTASFSPSFVSTRSDFTRFPCRVTFRRGLAVSSCFNSSKSPGAGGFLSPDNGGEVSYELHHDFSPQRRRSGSPVFVTLPVNSVSREGGRVLRPKAMMFSLKALATAGVEGVVVEIWWGLVEKNKPRVYDWRGYEELVAMACKCGLKVRAVLAFHQHGAGPDDPNWYVEIGSPPSYSGSLSPLCRIPLPLWVLDEIKKDVELAYCDRFGRRNIEYISLGCDILPVLCGRSPIQVYADFMRDFRDTFRSLLGVIITVRFYMILGVQIGMGPGGELRYPSFSPQEPNLAWSQELGEFQCYDKYMLASLNASARNIGMREWGNGGPFGTGSLMQNPEHTDFFKNDGGSWDTPYGKFFLEWYSGMLLLHGERICKEAETIFRGTEVHISAKLAVIHWHYVTQSHPSELTAGYYNTFNRDGYLSIARMFSKYGFSMCCSCFEMQDAVMQKINPDGSPEGFLRQLLLAARLCDLALEGQNFSTNLDDGAFTQVLKMSKFYSNGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQMSNGNIFRARLYSVGDTRFKTAPVMPEARLLYHLYQKSDDLWSNVVKCVVTADSSNDSFIAFRQEVTSPKRYNLKLVTAEILSPFFLMFCSVEVNSWYAGFI 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04556 636 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 422 445 IPR001554 GO:0000272|GO:0016161
Vimu11g04556 636 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 404 415 IPR001554 GO:0000272|GO:0016161
Vimu11g04556 636 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 113 127 IPR001554 GO:0000272|GO:0016161
Vimu11g04556 636 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 134 152 IPR001554 GO:0000272|GO:0016161
Vimu11g04556 636 Pfam Glycosyl hydrolase family 14 83 531 IPR001554 GO:0000272|GO:0016161
Vimu11g04556 636 SUPERFAMILY (Trans)glycosidases 76 562 IPR017853 -
Vimu11g04556 636 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 71 537 IPR001554 GO:0000272|GO:0016161
Vimu11g04556 636 Gene3D Glycosidases 70 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04556 Vimu-Chr11 66326255 66329084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04556 64 565 Glycoside Hydrolase AT4G17090 45.914 5.84e-146 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04556 K01177 - gmx:100805981 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04556 11 66326255 66329084 Vimu11g04556 11 66326255 66329084 ECH