Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04555 ATGCCGGGTCTTGTTTCCGTAAAAACCCCACCCGAAGCTCAACCGCTCCGAATATCCGTACCCAATACTCCCACGCAGAGATCCGAAACGAACAACGTCAACAGCAAAACGCCTTCTCCACTTCCTAAAAAACCACCCTCGCCATCACCTTCTCGCTCCTCCAAGAAGAAAACTCCCGAAACTCCTCCCAATCCGGTTCTCTCCGATGCCTCTCTCGACAACCCCGATCTCGGTCCTTTCCTACTTAAACTGGCGCGGGACACCATCGCCTCCGGCGATGGGCCCGCCAAGGCTCTTGACTTCGCCGTGCGGGCCTCCAAGTCCTTCGAGCGTTGCGCCGTCGAAGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCCTCGCTGCTATCTACTGCAGCCTCGCCCGCTTCGAGGAAGCCGTCCCCGTCCTCGAACGCGCCATACAGGTTCCTGACGTCGCGCGCGGAGCTGATCATGCCCTGGCCGCCTTCTCCGGCTACATGCAGCTTGGCGACACCTACTCCATGCTCGGCCAGGTCGACCGATCCATCTCCTGCTACGACCAGGGCCTCCAGATCCAGATCCAAGCCCTGGGTGAAACCGATCCTCGCGTCGGTGAAACTTGCCGATACTTGGCGGAGGCGAATGTGCAAGCGATGCAGTTTGACAAAGCGGAGGAGCTGTGTAAGAAGACTTTGGAGATTCATCGCGTGCATAGTGAACCGGCTTCACTTGAGGAAGCTGCCGATAGGAGGCTTATGGCACTGATTTGCGAGGCGAAGGGAGATTATGAAGCGGCATTGGAGCATCTTGTGCTTGCTAGCATGGCTATGATTGCAAATGGTCAGGATAATGAGGTTGCGTCGATTGATGTTAGCATTGGGAACATTTACATGTCACTTTGTCGTTTTGATGAGGCGATTTTCTCGTATCAGAAGGCACTTACTGTGTTTAAGTCTGCCAAGGGTGAGAACCACCCTTCCGTTGCTTCTGTTTTTGTACGGCTGGCTGATTTGTACCACCGGACTGGGAAGCTTCGTGAGTCGAAATCGTACTGTGAGAATGCACTCAGGATTTACTCAAAGCCGGTGCCGGGTACCACTGCTGAGGAGATTTCTGGTGGCTTGACAGAGGTTTCAGCGGTTTTTGAATCTGTGGATGAGCCAGAGGAGGCGCTCAAGCTCTTAAGCCGGGCCATGAAGTTGTTGGAGGATAAGCCAGGGCAGCAGAGCACTATTGCAGGGATTGAGGCACGGATGGGAGTGATGTATTACATGATTGGCAGGTATGAAGACTCAAGGAACTCATTTGAGAGTGCTGTTGCTAAACTCAGAGCCAGTGGGGAGCGGAAGAGTGCCTTCTTTGGAGTTGTTCTGAACCAGATGGGGTTGGCGTGTGTTCAACTGTTCAAGATAGATGAGGCTGCTGAATTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCGTGTCATCAAGATACTCTTGGAGTGTACAGCAACCTTGCAGCTACATATGATGCTATGGGAAGAGTGGGAGATGCGATTGAAATCTTAGAATATGTGCTTAAGTTGAGGGAGGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGTCTGGCTGAGCTTCTGAAAGAAGCAGGCAAGACACGGGACAGAAAAGCAAAATCTCTGGAAAACCTTATTGATCCTGGTTCAAAGAGGACAAAGAAGGAGGGAACAAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1779 0.5233 MPGLVSVKTPPEAQPLRISVPNTPTQRSETNNVNSKTPSPLPKKPPSPSPSRSSKKKTPETPPNPVLSDASLDNPDLGPFLLKLARDTIASGDGPAKALDFAVRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLARFEEAVPVLERAIQVPDVARGADHALAAFSGYMQLGDTYSMLGQVDRSISCYDQGLQIQIQALGETDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRVHSEPASLEEAADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEISGGLTEVSAVFESVDEPEEALKLLSRAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPGSKRTKKEGTKRWPGLGFRI 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04555 592 MobiDBLite consensus disorder prediction 557 586 - -
Vimu11g04555 592 Pfam MalT-like TPR region 128 277 IPR041617 -
Vimu11g04555 592 Gene3D Tetratricopeptide repeat domain 81 277 IPR011990 GO:0005515
Vimu11g04555 592 SUPERFAMILY TPR-like 118 271 IPR011990 GO:0005515
Vimu11g04555 592 MobiDBLite consensus disorder prediction 557 592 - -
Vimu11g04555 592 Coils Coil 541 561 - -
Vimu11g04555 592 Pfam Tetratricopeptide repeat 289 363 - -
Vimu11g04555 592 Pfam Tetratricopeptide repeat 460 532 - -
Vimu11g04555 592 Gene3D Tetratricopeptide repeat domain 278 453 IPR011990 GO:0005515
Vimu11g04555 592 Gene3D Tetratricopeptide repeat domain 454 583 IPR011990 GO:0005515
Vimu11g04555 592 MobiDBLite consensus disorder prediction 51 68 - -
Vimu11g04555 592 SUPERFAMILY TPR-like 249 363 IPR011990 GO:0005515
Vimu11g04555 592 SUPERFAMILY TPR-like 418 558 IPR011990 GO:0005515
Vimu11g04555 592 MobiDBLite consensus disorder prediction 16 38 - -
Vimu11g04555 592 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 452 569 - -
Vimu11g04555 592 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 32 573 - -
Vimu11g04555 592 ProSiteProfiles TPR repeat profile. 290 323 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 416 449 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 166 199 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 375 408 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 250 283 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 332 365 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 500 533 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 290 323 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 458 491 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 123 156 IPR019734 GO:0005515
Vimu11g04555 592 SMART tpr_5 208 241 IPR019734 GO:0005515
Vimu11g04555 592 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04555 Vimu-Chr11 66302530 66305483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04555 - - gmx:100815100 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04555 11 66302530 66305483 Vimu11g04555 11 66302530 66305483 ECH