Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04548 ATGGCGAGCATTGCTGGTACATGTCCTTTAGGCGCATTGAACAGTGTCTCAGAAAACAATAGGAAGAACTCTGTCGTTCATCATGAGGGGCTTCGATTGCCACAGAGAACGCAAATGCCTTTTTCACTTACAACCATTCCAAGCCACTACATTTCTGCTTCTTCATCTTCAAGATGCAGGACAATCAAGGCCATGGCTTCCTCAACCGTTGCAGCACCAAAGAGAGAAAAGGATCCAAAAAAGAGGGTAGTTATAACAGGAATGGGTCTTGTATCAGTCTTTGGCAGTGACATTGACACCTTTTACAACAAACTTCTTGAGGGAGAAAGTGGGATAAGCCTAATAGATAGGTTTGATGCCTCAAGTTTCTCTGTCCGATTTGGAGGTCAGATACGTGATTTCTCTTCAGAAGGTTACATTGATGGAAAGAACGATCGGCGCCTTGATGATTGCTGGAGGTATTGCATTGTAGCAGGCAAGAGGGCACTCGATGATGCCAACCTTGGACAACAAGTCCTTGACACTATGGACAAAACAAGAATAGGAGTTCTGGTGGGAACAGGAATGGGAGGTTTAACGGCTTTCTCTTCTGGTGTGGAAGCTCTTATCCAGAAGGGATATAAGAAAATTACTCCATTTTTCATTCCCTACTCCATCACCAACATGGGTTCTGCTCTGTTGGCTATAGACACAGGCCTAATGGGTCCAAATTATTCCATTTCCACTGCTTGTGCAACAGCAAACTACTGCTTTTATGCGGCTGCTAATCACATCAGAAGAGGTGAAGCAGATATCATGGTGGTTGGTGGGACTGAGGCTGCAATCATGCCTACTGGTGTTGGAGGTTTCATTGCTTGCAGGGCTTTATCTCAGAGGAATGAAGACCCCAAGAAGGCTTCACGACCATGGGACAAAGATCGTGATGGTTTTGTAATGGGTGAAGGCTCTGGTGTGCTGATAATGGAGAGCTTGGAGAGTGCAACAAAGAGGGGAGCCACAATCATAGCAGAATATTTGGGAGGTGCCATAACATGCGATGCTCATCACATGACTGATCCAAGATCTGATGGACTTGGAGTTTCATCTTGCATAACAAAGAGTTTAGAAGATGCTGGAGTTTCTCCCGAAGAGGTGAACTATGTGAATGCTCATGCCACATCAACATTGGCTGGTGATCTGGCTGAAGTTAATGCAATCAAAAAGGTATTTAAGGACACATCAGAGTTGAAAATGAATGCAACTAAGTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGGTGCATCCAAGCATTAACCAAGATAACTTGGAGCCTAGTGTGACAATTGACACTGTCCCCAACGTTAAGAAGCAGCATGAAGTTAATGTTGGTATATCCAACTCTTTTGGTTTCGGTGGACACAATTCAGTAGTTGTCTTTGCCCCATTCAGGCCATAA 1482 0.446 MASIAGTCPLGALNSVSENNRKNSVVHHEGLRLPQRTQMPFSLTTIPSHYISASSSSRCRTIKAMASSTVAAPKREKDPKKRVVITGMGLVSVFGSDIDTFYNKLLEGESGISLIDRFDASSFSVRFGGQIRDFSSEGYIDGKNDRRLDDCWRYCIVAGKRALDDANLGQQVLDTMDKTRIGVLVGTGMGGLTAFSSGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGEADIMVVGGTEAAIMPTGVGGFIACRALSQRNEDPKKASRPWDKDRDGFVMGEGSGVLIMESLESATKRGATIIAEYLGGAITCDAHHMTDPRSDGLGVSSCITKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSELKMNATKSMIGHGLGAAGGLEAIATIKAITTGWVHPSINQDNLEPSVTIDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFRP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04548 493 NCBIfam beta-ketoacyl-ACP synthase II 81 488 IPR017568 GO:0006633|GO:0016747
Vimu11g04548 493 Pfam Beta-ketoacyl synthase, N-terminal domain 81 327 IPR014030 -
Vimu11g04548 493 FunFam 3-oxoacyl-[acyl-carrier-protein] synthase 2 55 493 - -
Vimu11g04548 493 ProSitePatterns Ketosynthase family 3 (KS3) active site signature. 235 251 IPR018201 GO:0004315|GO:0006633
Vimu11g04548 493 SMART Beta-ketoacyl synthase 83 493 IPR020841 -
Vimu11g04548 493 Pfam Beta-ketoacyl synthase, C-terminal domain 336 448 IPR014031 -
Vimu11g04548 493 CDD KAS_I_II 81 488 IPR000794 -
Vimu11g04548 493 SUPERFAMILY Thiolase-like 295 489 IPR016039 GO:0016746
Vimu11g04548 493 Gene3D - 51 492 IPR016039 GO:0016746
Vimu11g04548 493 PANTHER POLYKETIDE SYNTHASE-RELATED 79 491 IPR000794 -
Vimu11g04548 493 ProSiteProfiles Ketosynthase family 3 (KS3) domain profile. 80 490 IPR020841 -
Vimu11g04548 493 SUPERFAMILY Thiolase-like 81 332 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04548 Vimu-Chr11 66261557 66265225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04548 31 493 Acyl Lipid Metabolism Gene Families AT5G46290 72.614 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04548 K09458 - gmx:100798044 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04548 11 66261557 66265225 Vimu11g04548 11 66261557 66265225 ECH